HMM Summary Page: TIGR02596

AccessionTIGR02596
NameTIGR02596
FunctionVerru_Chthon cassette protein D
Gene SymbolvccD
Trusted Cutoff70.00
Domain Trusted Cutoff70.00
Noise Cutoff63.00
Domain Noise Cutoff63.00
Isology Typesubfamily
HMM Length196
Mainrole CategoryCell envelope
Subrole CategorySurface structures
AuthorHaft DH
Entry DateJun 7 2005 9:06AM
Last ModifiedDec 6 2011 1:49PM
CommentThis model describes a nearly twenty member protein family in Verrucomicrobium spinosum and a somewhat smaller paralogous family in Chthoniobacter flavus. All members share a type IV pilin-like N-terminal leader sequence (TIGR02532). These proteins occur in the four-gene Verru_Chthon cassette, in which two other genes likewise encode a cleavage/methylation domain. Most of these cassettes occur next to an unusually large PEP-CTERM protein with an autotransporter domain.
Genome PropertyGenProp0663: Verrucomicrobium/Chthoniobacter four-plus-PEP_CTERM cassette (HMM)
GenProp0663: Verrucomicrobium/Chthoniobacter four-plus-PEP_CTERM cassette (HMM)
GenProp0663: Verrucomicrobium/Chthoniobacter four-plus-PEP_CTERM cassette (HMM)