HMM Summary Page: TIGR02620

Functionputative CRISPR-associated protein, VVA1548 family
Gene Symbolcsx16
Trusted Cutoff46.35
Domain Trusted Cutoff46.35
Noise Cutoff19.70
Domain Noise Cutoff19.70
Isology Typehypoth_equivalog_domain
HMM Length93
Mainrole CategoryMobile and extrachromosomal element functions
Subrole CategoryOther
Gene Ontology TermGO:0003674: molecular_function molecular_function
GO:0043571: maintenance of CRISPR repeat elements biological_process
AuthorHaft DH
Entry DateJul 15 2005 10:19AM
Last ModifiedFeb 14 2011 3:27PM
CommentThis model represents a conserved domain of about 95 amino acids exclusively in species with CRISPR (Clustered Regularly Interspaced Short Palidromic Repeats). In all bacterial species with members so far (Vibrio vulnificus YJ016, Mannheimia succiniciproducens MBEL55E, and Nitrosomonas europaea ATCC 19718) and but not in the archaeon Methanothermobacter thermautotrophicus str. Delta H, the gene for this protein is in the midst of a cluster of Cas protein gene near CRISPR repeats.
Genome PropertyGenProp0021: CRISPR region (HMM)