HMM Summary Page: TIGR02682

FunctionCRISPR-associated protein, Csx11 family
Trusted Cutoff248.95
Domain Trusted Cutoff248.95
Noise Cutoff241.10
Domain Noise Cutoff241.10
Isology Typehypoth_equivalog
HMM Length1007
Mainrole CategoryMobile and extrachromosomal element functions
Subrole CategoryOther
Gene Ontology TermGO:0003674: molecular_function molecular_function
GO:0005575: cellular_component cellular_component
GO:0043571: maintenance of CRISPR repeat elements biological_process
AuthorHaft DH
Entry DateNov 8 2005 2:35PM
Last ModifiedFeb 14 2011 3:27PM
CommentMembers of this uncommon, sporadically distributed protein family are large (>900 amino acids) and strictly associated, so far, with CRISPR-associated (Cas) gene clusters. Nearby Cas genes always include members of the RAMP superfamily and the six-gene CRISPR-associated RAMP module. Species in which it is found, so far, include three archaea (Methanosarcina mazei, M. barkeri and Methanobacterium thermoautotrophicum) and two bacteria (Thermodesulfovibrio yellowstonii DSM 11347 and Sulfurihydrogenibium azorense).
Genome PropertyGenProp0021: CRISPR region (HMM)