HMM Summary Page: TIGR02895

AccessionTIGR02895
Namespore_sigI
FunctionRNA polymerase sigma-I factor
Gene SymbolsigI
Trusted Cutoff185.00
Domain Trusted Cutoff185.00
Noise Cutoff81.55
Domain Noise Cutoff81.55
Isology Typeequivalog
HMM Length219
Mainrole CategoryTranscription
Subrole CategoryTranscription factors
Gene Ontology TermGO:0006352: transcription initiation, DNA-dependent biological_process
GO:0006352: transcription initiation, DNA-dependent biological_process
GO:0006352: transcription initiation, DNA-dependent biological_process
GO:0016987: sigma factor activity molecular_function
GO:0016987: sigma factor activity molecular_function
GO:0016987: sigma factor activity molecular_function
AuthorHaft DH
Entry DateMar 15 2006 1:40PM
Last ModifiedFeb 14 2011 3:27PM
CommentMembers of this sigma factor protein family are strictly limited to endospore-forming species in the Firmicutes lineage of bacteria, but are not universally present among such species. Sigma-I was shown to be induced by heat shock (PMID:11157964) in Bacillus subtilis and is suggested by its phylogenetic profile to be connected to the program of sporulation (PMID:16311624).
ReferencesRN [1] RM 11157964 RT Putative sigma factor SigI (YkoZ) of Bacillus subtilis is induced by heat shock. RA Zuber U, Drzewiecki K, Hecker M. RL J Bacteriol. 2001 Feb;183(4):1472-5. RN [2] RM 16311624 RT Life in Hot Carbon Monoxide: The Complete Genome Sequence of Carboxydothermus hydrogenoformans Z-2901. RA Wu M, Ren Q, Durkin AS, Daugherty SC, Brinkac LM, Dodson RJ, Madupu R, Sullivan SA, Kolonay JF, Nelson WC, Tallon LJ, Jones KM, Ulrich LE, Gonzalez JM, Zhulin IB, Robb FT, Eisen JA. RL PLoS Genet. 2005 Nov 25;1(5):e65
Genome PropertyGenProp0610: endospore formation marker gene set (HMM)
GenProp0610: endospore formation marker gene set (HMM)
GenProp0610: endospore formation marker gene set (HMM)