HMM Summary Page: TIGR02915

AccessionTIGR02915
NamePEP_resp_reg
FunctionPEP-CTERM-box response regulator transcription factor
Gene SymbolprsR
Trusted Cutoff502.60
Domain Trusted Cutoff502.60
Noise Cutoff461.10
Domain Noise Cutoff461.10
Isology Typeequivalog
HMM Length445
Mainrole CategoryRegulatory functions
Subrole CategoryDNA interactions
Gene Ontology TermGO:0000156: two-component response regulator activity molecular_function
GO:0000156: two-component response regulator activity molecular_function
GO:0000156: two-component response regulator activity molecular_function
GO:0003677: DNA binding molecular_function
GO:0003677: DNA binding molecular_function
GO:0003677: DNA binding molecular_function
GO:0045941: positive regulation of transcription biological_process
GO:0045941: positive regulation of transcription biological_process
GO:0045941: positive regulation of transcription biological_process
AuthorHaft DH
Entry DateApr 7 2006 3:39PM
Last ModifiedFeb 14 2011 3:27PM
CommentMembers of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (PF02954), a response regulator receiver domain (PF00072), and sigma-54 interaction domain (PF00158).
ReferencesRN [1] RM PMID: 16930487 RT Exopolysaccharide-associated protein sorting in environmental organisms: the PEP-CTERM/EpsH system. Application of a novel phylogenetic profiling heuristic. RA Haft DH, Paulsen IT, Ward N, Selengut JD RL BMC Biol. 2006 Aug 24;4(1):29.
Genome PropertyGenProp0652: exopolysaccharide biosynthesis, exosortase A-associated (HMM)
GenProp0652: exopolysaccharide biosynthesis, exosortase A-associated (HMM)
GenProp0652: exopolysaccharide biosynthesis, exosortase A-associated (HMM)