HMM Summary Page: TIGR03097

Functionprobable O-glycosylation ligase, exosortase A-associated
Trusted Cutoff188.10
Domain Trusted Cutoff188.10
Noise Cutoff124.05
Domain Noise Cutoff124.05
Isology Typehypoth_equivalog
HMM Length408
AuthorSelengut J, Haft DH
Entry DateOct 11 2006 10:23AM
Last ModifiedJun 8 2011 1:44PM
CommentThese proteins are members of the O-antigen polymerase (wzy) family described by Pfam model PF04932. This group is associated with genomes and ususally genomic contexts containing elements of the exosortase/PEP-CTERM protein export system [1], specificially the type 1 variety of this system described by the Genome Property, GenProp0652.
ReferencesRN [1] RM PMID: 16930487 RT Exopolysaccharide-associated protein sorting in environmental organisms: the PEP-CTERM/EpsH system. Application of a novel phylogenetic profiling heuristic. RA Haft DH, Paulsen IT, Ward N, Selengut JD RL BMC Biol. 2006 Aug 24;4(1):29.
Genome PropertyGenProp0652: exopolysaccharide biosynthesis, exosortase A-associated (HMM)