HMM Summary Page: TIGR03159

AccessionTIGR03159
Namecas_Csc1
FunctionCRISPR type I-D/CYANO-associated protein Csc1
Gene Symbolcsc1
Trusted Cutoff41.40
Domain Trusted Cutoff41.40
Noise Cutoff39.70
Domain Noise Cutoff39.70
Isology Typehypoth_equivalog
HMM Length225
Mainrole CategoryMobile and extrachromosomal element functions
Subrole CategoryOther
Gene Ontology TermGO:0003674: molecular_function molecular_function
GO:0003674: molecular_function molecular_function
GO:0003674: molecular_function molecular_function
AuthorHaft DH
Entry DateNov 15 2006 2:10PM
Last ModifiedFeb 14 2011 3:27PM
CommentCRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. This family is designated Csc1 for CRISPR/Cas Subtype Cyano protein 1, as it is often the first gene upstream of the core cas genes, cas3-cas4-cas1-cas2.
Genome PropertyGenProp0685: CRISPR system, I-D/Cyano subtype (HMM)
GenProp0685: CRISPR system, I-D/Cyano subtype (HMM)
GenProp0685: CRISPR system, I-D/Cyano subtype (HMM)