HMM Summary Page: TIGR03185

FunctionDNA sulfur modification protein DndD
Gene SymboldndD
Trusted Cutoff245.85
Domain Trusted Cutoff245.85
Noise Cutoff38.50
Domain Noise Cutoff38.50
Isology Typeequivalog
HMM Length650
Mainrole CategoryDNA metabolism
Subrole CategoryDNA replication, recombination, and repair
AuthorHaft DH
Entry DateDec 4 2006 12:02PM
Last ModifiedFeb 10 2012 11:14AM
CommentThis model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
ReferencesRN [1] RM PMID: 16102010 RT A novel DNA modification by sulphur. RA Zhou X, He X, Liang J, Li A, Xu T, Kieser T, Helmann JD, Deng Z RL Mol Microbiol. 2005 Sep;57(5):1428-38. RN [2] RM PMID:22070167 RT ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process. RA Basu MK, Selengut JD, Haft DH RL BMC Bioinformatics. 2011 Nov 9;12:434.
Genome PropertyGenProp0701: DNA sulfur modification system dnd (HMM)