HMM Summary Page: TIGR03238

AccessionTIGR03238
Namednd_assoc_3
FunctionDNA phosphorothioation-dependent restriction protein DptF
Gene SymboldptF
Trusted Cutoff50.00
Domain Trusted Cutoff50.00
Noise Cutoff30.00
Domain Noise Cutoff30.00
Isology Typeequivalog
HMM Length504
Mainrole CategoryUnknown function
Subrole CategoryGeneral
AuthorHaft DH
Entry DateJan 4 2007 12:57PM
Last ModifiedFeb 10 2012 11:42AM
CommentA DNA sulfur modification (phosphorothioation) system, dnd (degradation during electrophoresis), is sparsely and sporadically distributed among the bacteria. This protein is one member of a three-gene restriction enzyme cassette that depends on DNA phosphorothioation.
ReferencesRN [1] RM PMID:20627870 RT A novel host-specific restriction system associated with DNA backbone S-modification in Salmonella. RA Xu T, Yao F, Zhou X, Deng Z, You D RL Nucleic Acids Res. 2010 Nov 1;38(20):7133-41. RN [2] RM PMID:22070167 RT ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process. RA Basu MK, Selengut JD, Haft DH RL BMC Bioinformatics. 2011 Nov 9;12:434.
Genome PropertyGenProp0701: DNA sulfur modification system dnd (HMM)
GenProp0701: DNA sulfur modification system dnd (HMM)
GenProp0701: DNA sulfur modification system dnd (HMM)