Accession | TIGR03238 |
Name | dnd_assoc_3 |
Function | DNA phosphorothioation-dependent restriction protein DptF |
Gene Symbol | dptF |
Trusted Cutoff | 50.00 |
Domain Trusted Cutoff | 50.00 |
Noise Cutoff | 30.00 |
Domain Noise Cutoff | 30.00 |
Isology Type | equivalog |
HMM Length | 504 |
Mainrole Category | Unknown function |
Subrole Category | General |
Author | Haft DH |
Entry Date | Jan 4 2007 12:57PM |
Last Modified | Feb 10 2012 11:42AM |
Comment | A DNA sulfur modification (phosphorothioation) system, dnd (degradation during electrophoresis), is sparsely and sporadically distributed among the bacteria. This protein is one member of a three-gene restriction enzyme cassette that depends on DNA phosphorothioation. |
References | RN [1]
RM PMID:20627870
RT A novel host-specific restriction system associated with DNA backbone S-modification in Salmonella.
RA Xu T, Yao F, Zhou X, Deng Z, You D
RL Nucleic Acids Res. 2010 Nov 1;38(20):7133-41.
RN [2]
RM PMID:22070167
RT ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process.
RA Basu MK, Selengut JD, Haft DH
RL BMC Bioinformatics. 2011 Nov 9;12:434. |
Genome Property | GenProp0701: DNA sulfur modification system dnd (HMM) |