HMM Summary Page: TIGR03266

Functionputative methanogenesis marker protein 1
Trusted Cutoff365.00
Domain Trusted Cutoff365.00
Noise Cutoff265.00
Domain Noise Cutoff265.00
Isology Typehypoth_equivalog
HMM Length376
AuthorHaft DH
Entry DateJan 16 2007 4:43PM
Last ModifiedMay 9 2011 8:01PM
CommentMembers of this protein family represent a distinct clade among the larger set of proteins that belong to families TIGR00702 and PF02624. Proteins from this clade are found in genome sequence if and only if the species sequenced is one of the methanogens. All methanogens belong to the archaea; some but not all of those sequenced are hyperthermophiles. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006).
ReferencesRN [1] RM PMID: 16930487 RT Exopolysaccharide-associated protein sorting in environmental organisms: the PEP-CTERM/EpsH system. Application of a novel phylogenetic profiling heuristic. RA Haft DH, Paulsen IT, Ward N, Selengut JD RL BMC Biol. 2006 Aug 24;4:29.
Genome PropertyGenProp0722: methanogenesis marker set (HMM)