HMM Summary Page: TIGR03267

AccessionTIGR03267
Namemethan_mark_2
Functionputative methanogenesis marker protein 2
Trusted Cutoff365.00
Domain Trusted Cutoff365.00
Noise Cutoff335.00
Domain Noise Cutoff335.00
Isology Typehypoth_equivalog
HMM Length323
Mainrole CategoryEnergy metabolism
Subrole CategoryMethanogenesis
AuthorHaft DH
Entry DateJan 17 2007 10:08AM
Last ModifiedFeb 10 2012 11:28AM
CommentA single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. Sequence similarity to various bacterial proteins is reflected in Pfam models PF00586 and PF02769, AIR synthase related protein N-terminal and C-terminal domains, respectively. The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
ReferencesDR PFAM; PF00586; AIRS DR PFAM; PF02769; AIRS_C RN [1] RM PMID:22070167 RT ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process. RA Basu MK, Selengut JD, Haft DH RL BMC Bioinformatics. 2011 Nov 9;12:434.
Genome PropertyGenProp0722: methanogenesis marker set (HMM)
GenProp0722: methanogenesis marker set (HMM)
GenProp0722: methanogenesis marker set (HMM)