HMM Summary Page: TIGR03271

AccessionTIGR03271
Namemethan_mark_5
Functionputative methanogenesis marker protein 5
Trusted Cutoff140.25
Domain Trusted Cutoff140.25
Noise Cutoff43.90
Domain Noise Cutoff43.90
Isology Typehypoth_equivalog
HMM Length142
Mainrole CategoryEnergy metabolism
Subrole CategoryMethanogenesis
AuthorHaft DH
Entry DateJan 18 2007 11:13AM
Last ModifiedFeb 10 2012 11:33AM
CommentMembers of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
ReferencesRN [1] RM PMID:22070167 RT ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process. RA Basu MK, Selengut JD, Haft DH RL BMC Bioinformatics. 2011 Nov 9;12:434.
Genome PropertyGenProp0722: methanogenesis marker set (HMM)
GenProp0722: methanogenesis marker set (HMM)
GenProp0722: methanogenesis marker set (HMM)
GenProp0722: methanogenesis marker set (HMM)
GenProp0722: methanogenesis marker set (HMM)
GenProp0722: methanogenesis marker set (HMM)