HMM Summary Page: TIGR03286

AccessionTIGR03286
Namemethan_mark_15
Functionputative methanogenesis marker protein 15
Trusted Cutoff455.75
Domain Trusted Cutoff455.75
Noise Cutoff275.55
Domain Noise Cutoff275.55
Isology Typehypoth_equivalog
HMM Length404
Mainrole CategoryEnergy metabolism
Subrole CategoryMethanogenesis
AuthorHaft DH
Entry DateJan 22 2007 2:31PM
Last ModifiedFeb 10 2012 11:32AM
CommentMembers of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (PF01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
ReferencesRN [1] RM PMID:22070167 RT ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process. RA Basu MK, Selengut JD, Haft DH RL BMC Bioinformatics. 2011 Nov 9;12:434.
Genome PropertyGenProp0722: methanogenesis marker set (HMM)
GenProp0722: methanogenesis marker set (HMM)
GenProp0722: methanogenesis marker set (HMM)
GenProp0722: methanogenesis marker set (HMM)
GenProp0722: methanogenesis marker set (HMM)
GenProp0722: methanogenesis marker set (HMM)