HMM Summary Page: TIGR03287

AccessionTIGR03287
Namemethan_mark_16
Functionputative methanogenesis marker 16 metalloprotein
Trusted Cutoff363.95
Domain Trusted Cutoff363.95
Noise Cutoff232.70
Domain Noise Cutoff232.70
Isology Typehypoth_equivalog
HMM Length391
Mainrole CategoryEnergy metabolism
Subrole CategoryMethanogenesis
AuthorHaft DH
Entry DateJan 22 2007 4:30PM
Last ModifiedFeb 14 2011 3:27PM
CommentMembers of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (PF00037), with each copy having four Cys residues invariant across all members.
ReferencesDR PFAM; PF01837; DUF39: Domain of unknown function DR PFAM; PF00037; Fer4: 4Fe-4S binding domain
Genome PropertyGenProp0722: methanogenesis marker set (HMM)
GenProp0722: methanogenesis marker set (HMM)