HMM Summary Page: TIGR03355

Functiontype VI secretion protein, EvpB/VC_A0108 family
Trusted Cutoff271.50
Domain Trusted Cutoff271.50
Noise Cutoff110.15
Domain Noise Cutoff110.15
Isology Typehypoth_equivalog
HMM Length473
Mainrole CategoryProtein fate
Subrole CategoryProtein and peptide secretion and trafficking
Gene Ontology TermGO:0003674: molecular_function molecular_function
GO:0033103: protein secretion by the type VI secretion system biological_process
GO:0033104: type VI protein secretion system complex cellular_component
AuthorHaft DH
Entry DateMar 16 2007 9:40AM
Last ModifiedFeb 14 2011 3:27PM
CommentWork by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PMID:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
ReferencesRN [1] RM PMID: 15228535 RT Use of proteomics to identify novel virulence determinants that are required for Edwardsiella tarda pathogenesis. RA Rao PS, Yamada Y, Tan YP, Leung KY RL Mol Microbiol. 2004 Jul;53(2):573-86. RN [2] RM PMID: 16763151 RT A virulence locus of Pseudomonas aeruginosa encodes a protein secretion apparatus. RA Mougous JD, Cuff ME, Raunser S, Shen A, Zhou M, Gifford CA, Goodman AL, Joachimiak G, Ordonez CL, Lory S, Walz T, Joachimiak A, Mekalanos JJ RL Science. 2006 Jun 9;312(5779):1526-30.
Genome PropertyGenProp0735: type VI secretion (HMM)