HMM Summary Page: TIGR03361

Functiontype VI secretion system Vgr family protein
Trusted Cutoff186.35
Domain Trusted Cutoff186.35
Noise Cutoff180.60
Domain Noise Cutoff180.60
Isology Typesubfamily_domain
HMM Length513
Gene Ontology TermGO:0003674: molecular_function molecular_function
GO:0033103: protein secretion by the type VI secretion system biological_process
AuthorHaft DH
Entry DateMar 18 2007 11:16PM
Last ModifiedFeb 14 2011 3:27PM
CommentMembers of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.
ReferencesDR TIGRFAM; vgr_GE; Rhs element Vgr protein RN [1] RM PMID: 16763151 RT A virulence locus of Pseudomonas aeruginosa encodes a protein secretion apparatus. RA Mougous JD, Cuff ME, Raunser S, Shen A, Zhou M, Gifford CA, Goodman AL, Joachimiak G, Ordonez CL, Lory S, Walz T, Joachimiak A, Mekalanos JJ RL Science. 2006 Jun 9;312(5779):1526-30.
Genome PropertyGenProp0735: type VI secretion (HMM)