HMM Summary Page: TIGR03488

FunctionCRISPR-associated protein Cas5, subtype PGING
Gene Symbolcas5
Trusted Cutoff100.00
Domain Trusted Cutoff100.00
Noise Cutoff40.00
Domain Noise Cutoff40.00
Isology Typeequivalog
HMM Length236
AuthorHaft DH
Entry DateOct 4 2007 1:48PM
Last ModifiedJul 19 2012 12:22PM
CommentCC Members of this protein family are cas, or CRISPR-associated, proteins. The two sequences in the alignment seed are found within cas gene clusters that are adjacent to CRISPR DNA repeats in two members of the order Bacteroidales, Porphyromonas gingivalis W83 and Bacteroides forsythus ATCC 43037. This cas protein family is unique to the Pgingi (Porphyromonas gingivalis) subtype, but shows some sequence similarity to genes of the Cas5 type (see TIGR02593).
Genome PropertyGenProp0768: CRISPR system, Pging subtype (HMM)