HMM Summary Page: TIGR03537

AccessionTIGR03537
NameDapC
Functionsuccinyldiaminopimelate transaminase
Gene SymboldapC
Trusted Cutoff453.60
Domain Trusted Cutoff453.60
Noise Cutoff350.20
Domain Noise Cutoff350.20
Isology Typeequivalog
EC Number2.6.1.17
HMM Length350
AuthorSelengut J
Entry DateJan 31 2008 11:09AM
Last ModifiedFeb 14 2011 3:27PM
CommentThe four sequences which make up the seed for this model are not closely related, although they are all members of the PF00155 family of aminotransferases and are more closely related to each other than to anything else. Additionally, all of them are found in the vicinity of genes involved in the biosynthesis of lysine via the diaminopimelate pathway (GenProp0125), although this amount to a separation of 12 genes in the case of Sulfurihydrogenibium azorense Az-Fu1. None of these genomes contain another strong candidate for this role in the pathway. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the PF00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Genome PropertyGenProp0786: lysine biosynthesis via diaminopimelate (DAP), succinylated branch (HMM)
GenProp0786: lysine biosynthesis via diaminopimelate (DAP), succinylated branch (HMM)
GenProp0786: lysine biosynthesis via diaminopimelate (DAP), succinylated branch (HMM)