HMM Summary Page: TIGR03662

Functionchlor_Arch_YYY domain
Trusted Cutoff300.25
Domain Trusted Cutoff300.25
Noise Cutoff232.60
Domain Noise Cutoff232.60
Isology Typesubfamily_domain
HMM Length727
AuthorHaft DH
Entry DateSep 26 2008 9:18AM
Last ModifiedMar 1 2011 11:50AM
CommentMembers of this highly hydrophobic probable integral membrane family belong to two classes. In one, a single copy of the region modeled by this HMM represents essentially the full length of a strongly hydrophobic protein of about 700 to 900 residues (variable because of long inserts in some). The domain architecture of the other class consists of an additional N-terminal region, two copies of the region represented by this model, and three to four repeats of TPR, or tetratricopeptide repeat. The unusual species range includes several Archaea, several Chloroflexi, and Clostridium phytofermentans. An unusual motif YYYxG is present, and we suggest the name Chlor_Arch_YYY protein. The function is unknown.
Genome PropertyGenProp0830: integral membrane mystery pair (HMM)