HMM Summary Page: TIGR03670

AccessionTIGR03670
NamerpoB_arch
FunctionDNA-directed RNA polymerase subunit B
Gene SymbolrpoB
Trusted Cutoff811.00
Domain Trusted Cutoff811.00
Noise Cutoff790.35
Domain Noise Cutoff790.35
Isology Typeequivalog
EC Number2.7.7.6
HMM Length599
AuthorSelengut J
Entry DateOct 21 2008 5:25PM
Last ModifiedFeb 14 2011 3:27PM
CommentThis model represents the archaeal version of DNA-directed RNA polymerase subunit B (rpoB) and is observed in all archaeal genomes.
ReferencesRN [1] RM PMID:2501756 RT Organization and nucleotide sequence of the genes encoding the large subunits A, B and C of the DNA-dependent RNA polymerase of the archaebacterium Sulfolobus acidocaldarius. RA Puhler G, Lottspeich F, Zillig W RL Nucleic Acids Res. 1989 Jun 26;17(12):4517-34. RN [2] RM PMID:1408768 RT Nucleotide sequence of the genes encoding the three largest subunits of the DNA-dependent RNA polymerase from the archaeum Thermococcus celer. RA Klenk HP, Schwass V, Lottspeich F, Zillig W RL Nucleic Acids Res. 1992 Sep 11;20(17):4659. RN [3] RM PMID:2834336 RT Cloning and physical mapping of RNA polymerase genes from Methanobacterium thermoautotrophicum and comparison of homologies and gene orders with those of RNA polymerase genes from other methanogenic archaebacteria. RA Schallenberg J, Moes M, Truss M, Reiser W, Thomm M, Stetter KO, Klein A RL J Bacteriol. 1988 May;170(5):2247-53. RN [4] RM PMID:18235446 RT The X-ray crystal structure of RNA polymerase from Archaea. RA Hirata A, Klein BJ, Murakami KS RL Nature. 2008 Feb 14;451(7180):851-4. Epub 2008 Jan 30.
Genome PropertyGenProp0831: archaeal core gene set, exactly 1 per genome (HMM)
GenProp0831: archaeal core gene set, exactly 1 per genome (HMM)
GenProp0831: archaeal core gene set, exactly 1 per genome (HMM)