HMM Summary Page: TIGR03677

AccessionTIGR03677
Namerpl7ae
Function50S ribosomal protein L7Ae
Gene Symbolrpl7ae
Trusted Cutoff134.60
Domain Trusted Cutoff134.60
Noise Cutoff134.35
Domain Noise Cutoff134.35
Isology Typeequivalog
HMM Length117
AuthorSelengut J
Entry DateOct 27 2008 10:29AM
Last ModifiedFeb 14 2011 3:27PM
CommentThis model specifically identifies the archaeal version of the large ribosomal complex L7 protein. The family is a narrower version of the PF01248 model which also recognizes the L30 protein. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
ReferencesRN [1] RM PMID:16008351 RT The crystal structure of the Methanocaldococcus jannaschii multifunctional L7Ae RNA-binding protein reveals an induced-fit interaction with the box C/D RNAs. RA Suryadi J, Tran EJ, Maxwell ES, Brown BA 2nd RL Biochemistry. 2005 Jul 19;44(28):9657-72.
Genome PropertyGenProp0831: archaeal core gene set, exactly 1 per genome (HMM)