HMM Summary Page: TIGR03742

FunctionPRTRC system protein F
Trusted Cutoff58.40
Domain Trusted Cutoff58.40
Noise Cutoff31.40
Domain Noise Cutoff31.40
Isology Typesubfamily
HMM Length343
AuthorHaft DH
Entry DateMay 11 2009 12:05PM
Last ModifiedFeb 14 2011 3:27PM
CommentA novel genetic system characterized by seven (usually) major proteins, including a ParB homolog and a ThiF homolog, is commonly found on plasmids or in bacterial chromosomal regions near phage, plasmid, or transposon markers. It is most common among the beta Proteobacteria. We designate the system PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein F. It is the most divergent of the families.
Genome PropertyGenProp0854: ParB-rel/ThiF-rel cassette PRTRC (HMM)