HMM Summary Page: TIGR03744

AccessionTIGR03744
NametraC_PFL_4706
Functionconjugative transfer ATPase, PFL_4706 family
Trusted Cutoff520.60
Domain Trusted Cutoff520.60
Noise Cutoff450.10
Domain Noise Cutoff450.10
Isology Typeequivalog
HMM Length892
Mainrole CategoryMobile and extrachromosomal element functions
Subrole CategoryPlasmid functions
Gene Ontology TermGO:0005524: ATP binding molecular_function
GO:0005524: ATP binding molecular_function
GO:0005524: ATP binding molecular_function
GO:0005575: cellular_component cellular_component
GO:0005575: cellular_component cellular_component
GO:0005575: cellular_component cellular_component
GO:0008150: biological_process biological_process
GO:0008150: biological_process biological_process
GO:0008150: biological_process biological_process
AuthorHaft DH
Entry DateMay 18 2009 1:25PM
Last ModifiedFeb 14 2011 3:27PM
CommentMembers of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Genome PropertyGenProp0855: integrating conjugative element, PFGI-1 class (HMM)
GenProp0855: integrating conjugative element, PFGI-1 class (HMM)
GenProp0855: integrating conjugative element, PFGI-1 class (HMM)