HMM Summary Page: TIGR03754

AccessionTIGR03754
Nameconj_TOL_TraD
Functionconjugative coupling factor TraD, PFGI-1 class
Gene SymboltraD
Trusted Cutoff647.55
Domain Trusted Cutoff647.55
Noise Cutoff485.15
Domain Noise Cutoff485.15
Isology Typeequivalog
HMM Length643
AuthorHaft DH
Entry DateMay 21 2009 12:18PM
Last ModifiedFeb 14 2011 3:27PM
CommentMembers of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Genome PropertyGenProp0855: integrating conjugative element, PFGI-1 class (HMM)
GenProp0855: integrating conjugative element, PFGI-1 class (HMM)
GenProp0855: integrating conjugative element, PFGI-1 class (HMM)