HMM Summary Page: TIGR03775

Functionrickettsial palindromic element RPE3 domain
Trusted Cutoff30.25
Domain Trusted Cutoff30.25
Noise Cutoff23.45
Domain Noise Cutoff23.45
Isology Typedomain
HMM Length43
AuthorHaft DH
Entry DateJun 16 2009 2:43PM
Last ModifiedMar 2 2011 2:55PM
CommentThis HMM describes protein translations of a second family, RPE3, of Rickettsia palindromic elements (RPE). The elements spread within a genome as selfish genetic elements, inserting into genes additional coding regions that does not disrupt the reading frame. This model finds RPE-encoded regions in several Rickettsial species and, so far, no where else.
Genome PropertyGenProp0476: protein-coding palindromic elements (HMM)
GenProp0476: protein-coding palindromic elements (HMM)