HMM Summary Page: TIGR03875

AccessionTIGR03875
NameRNA_lig_partner
FunctionRNA ligase partner, MJ_0950 family
Trusted Cutoff95.30
Domain Trusted Cutoff95.30
Noise Cutoff90.65
Domain Noise Cutoff90.65
Isology Typehypoth_equivalog
HMM Length206
AuthorHaft DH
Entry DateOct 22 2009 9:13AM
Last ModifiedFeb 14 2011 3:27PM
CommentThis uncharacterized protein family is found almost perfectly in the same set of genomes as the Pab1020 family described by model TIGR01209. These pairs are found mostly in Archaea, but also in a few bacteria (e.g. Alkalilimnicola ehrlichei MLHE-1, Aquifex aeolicus). While the partner protein has been described as homodimeric ligase that has RNA circularization activity, the function of this protein (also called UPF0278) is unknown.
Genome PropertyGenProp0898: RNA ligase/unknown protein pair (HMM)
GenProp0898: RNA ligase/unknown protein pair (HMM)
GenProp0898: RNA ligase/unknown protein pair (HMM)
GenProp0898: RNA ligase/unknown protein pair (HMM)
GenProp0898: RNA ligase/unknown protein pair (HMM)
GenProp0898: RNA ligase/unknown protein pair (HMM)