HMM Summary Page: TIGR03901

FunctionMYXO-CTERM domain
Trusted Cutoff25.50
Domain Trusted Cutoff25.50
Noise Cutoff15.00
Domain Noise Cutoff15.00
Isology Typedomain
HMM Length33
AuthorHaft DH
Entry DateDec 15 2009 4:15PM
Last ModifiedApr 12 2012 5:44PM
CommentThis model describes MYXO-CTERM, a C-terminal putative protein sorting domain, analogous to LPXTG (TIGR01167) and PEP-CTERM (TIGR02595). It is restricted to the Myxococcales, a division of the Deltaproteobacteria, with over 60 members occurring in Plesiocystis pacifica SIR-1. An example protein is TraA, involved in outer membrane exchange (lipids and proteins) through which one strain of Myxococcus can repair a mobility defect in another. The trusted cutoff for this model is set artificially high to avoid false positives, and consequently only about half of all members are recognized.
ReferencesRN [1] RT Cell Contact–Dependent Outer Membrane Exchange in Myxobacteria: Genetic Determinants and Mechanism RA Pathak DT, Wei1 X, Bucuvalas A, Haft DH, Gerloff D, Wall D RL PLoS Genet 2012 8(4): e1002626
Genome PropertyGenProp0960: protein sorting system, Deltaproteobacteria (incomplete) (HMM)