HMM Summary Page: TIGR03902

AccessionTIGR03902
Namerhom_GG_sort
Functionrhombosortase
Gene SymbolrrtA
Trusted Cutoff84.00
Domain Trusted Cutoff84.00
Noise Cutoff78.00
Domain Noise Cutoff78.00
Isology Typeequivalog
EC Number3.4.21.-
HMM Length154
AuthorHaft DH
Entry DateDec 16 2009 10:02PM
Last ModifiedFeb 10 2012 10:51AM
CommentThis model describes a rhomboid-like intramembrane serine protease. Its species distribution closely matches model TIGR03501, GlyGly-CTERM, which describes a protein targeting domain analogous to LPXTG and PEP-CTERM. In a number of species (Ralstonia eutropha ,R. metallidurans, R. solanacearum, Marinobacter aquaeolei, etc) with just one GlyGly-CTERM protein (i.e., a dedicated system), the rhombosortase and GlyGly-CTERM genes are adjacent.
ReferencesDR PFAM; PF01694; peptidase, S54 (rhomboid) family RN [1] RM PMID:22194940 RT GlyGly-CTERM and rhombosortase: a C-terminal protein processing signal in a many-to-one pairing with a rhomboid family intramembrane serine protease. RA Haft DH, Varghese N RL PLoS One. 2011;6(12):e28886.
Genome PropertyGenProp0778: protein sorting system, GlyGly-CTERM/rhombosortase (HMM)
GenProp0778: protein sorting system, GlyGly-CTERM/rhombosortase (HMM)
GenProp0778: protein sorting system, GlyGly-CTERM/rhombosortase (HMM)