| Accession | TIGR03976 |
| Name | chp_LLNDYxLRE |
| Function | His-Xaa-Ser system protein HsxD |
| Gene Symbol | hsxD |
| Trusted Cutoff | 50.00 |
| Domain Trusted Cutoff | 50.00 |
| Noise Cutoff | 30.00 |
| Domain Noise Cutoff | 30.00 |
| Isology Type | hypoth_equivalog |
| HMM Length | 90 |
| Author | Haft DH |
| Entry Date | Mar 26 2010 4:17PM |
| Last Modified | Jun 9 2011 9:48AM |
| Comment | This rare conserved hypothetical protein of small size occurs exclusively, and perhaps universally, in the context of a pair of (uncharacterized) radical SAM proteins, TIGR03977 and TIGR03978. Many members of this family have invariant motifs LYW and LLNDYxLRE, but PSI-BLAST starting from family members well below 20 % pairwise sequence identity to this group eventually brings in the entire family as modeled here. The family TIGR03979 represents the fourth regularly conserved member of this system. |
| References | RN [1]
RM PMID:21478363
RT Biological systems discovery in silico: radical S-adenosylmethionine protein families and their target peptides for posttranslational mo
dification.
RA Haft DH, Basu MK
RL J Bacteriol. 2011 Jun;193(11):2745-55. |
| Genome Property | GenProp0921: radical SAM pair and His-Xaa-Ser repeats peptide (HMM) |
