HMM Summary Page: TIGR04065

AccessionTIGR04065
Nameocin_CLI_3235
Functionputative bacteriocin precursor, CLI_3235 family
Trusted Cutoff26.00
Domain Trusted Cutoff26.00
Noise Cutoff20.00
Domain Noise Cutoff20.00
Isology Typehypoth_equivalog
HMM Length34
AuthorHaft DH
Entry DateSep 30 2010 9:26PM
Last ModifiedJun 9 2011 9:54AM
CommentMembers of this protein family are Cys-rich putative bacteriocin precursor peptides restricted to the Clostridia but found in multiple species with up to three per genome. They are found next to a CLI_3234 family radical SAM protein that may perform post-translational modification. This model describes approximately 35 residues starting from the N-terminus. Precursor peptides average about 50 amino acids in length.
ReferencesRN [1] RM PMID:21478363 RT Biological systems discovery in silico: radical S-adenosylmethionine protein families and their target peptides for posttranslational modification. RA Haft DH, Basu MK RL J Bacteriol. 2011 Jun;193(11):2745-55.
Genome PropertyGenProp0945: radical SAM maturase bacteriocin system, CLI_3235 type (HMM)
GenProp0945: radical SAM maturase bacteriocin system, CLI_3235 type (HMM)
GenProp0945: radical SAM maturase bacteriocin system, CLI_3235 type (HMM)