HMM Summary Page: TIGR04071

AccessionTIGR04071
Namemethanobac_OB3b
Functionmethanobactin precursor, Mb-OB3b family
Gene SymbolmbnA
Trusted Cutoff30.00
Domain Trusted Cutoff30.00
Noise Cutoff20.00
Domain Noise Cutoff20.00
Isology Typesubfamily
HMM Length25
AuthorHaft DH
Entry DateOct 10 2010 4:35PM
Last ModifiedApr 28 2011 12:01PM
CommentMethanobactins are siderophore-like copper-chelating natural products with considerable variety from species to species. The 11-residue methanobactin of Methylosinus trichosporium OB3b is derived from a 30-residue precursor. A very similar 31-residue precursor is found in the rice endophyte Azospirillum sp. B510, which has not yet been shown to produce a methanobactin. This HMM models the shared region of the first 25 amino acids, including a Cys-Gly-Ser motif.
ReferencesRN [1] RM PMID:20961038 RT A comparison of methanobactins from Methylosinus trichosporium OB3b and Methylocystis strain Sb2 predicts methanobactins are synthesized from diverse peptide precursors modified to create a common core for binding and reducing copper ions. RA Krentz BD, Mulheron HJ, Semrau JD, Dispirito AA, Bandow NL, Haft DH, Vuilleumier S, Murrell JC, McEllistrem MT, Hartsel SC, Gallagher WH RL Biochemistry. 2010 Nov 30;49(47):10117-30.
Genome PropertyGenProp0962: methanobactin biosynthesis, Mb-OB3b family (HMM)