HMM Summary Page: TIGR04135

FunctionCys-rich radical SAM target, FibroRumin family
Trusted Cutoff45.00
Domain Trusted Cutoff45.00
Noise Cutoff35.00
Domain Noise Cutoff30.00
Isology Typesubfamily
HMM Length52
AuthorHaft DH
Entry DateMar 2 2011 12:35PM
Last ModifiedAug 2 2011 2:33PM
CommentMembers of this protein family are cysteine-rich small peptides, about 52 amino acids long, that are proposed targets for modification by a radical SAM enzyme. Known occurrences are as tandem gene pairs Fibrobacter succinogenes subsp. succinogenes S85 (missed gene calls) and in Ruminococcus albus 8.
ReferencesRN [1] RM PMID:21478363 RT Biological systems discovery in silico: radical S-adenosylmethionine protein families and their target peptides for posttranslational modification. RA Haft DH, Basu MK RL J Bacteriol. 2011 Jun;193(11):2745-55.
Genome PropertyGenProp0982: radical SAM maturase system, FibroRumin system (HMM)