| Accession | TIGR04174 |
| Name | IPTL_CTERM |
| Function | IPTL-CTERM protein sorting domain |
| Trusted Cutoff | 20.50 |
| Domain Trusted Cutoff | 20.50 |
| Noise Cutoff | 20.00 |
| Domain Noise Cutoff | 20.00 |
| Isology Type | subfamily_domain |
| HMM Length | 27 |
| Author | Haft DH |
| Entry Date | Jun 6 2011 5:29PM |
| Last Modified | Feb 10 2012 12:32PM |
| Comment | This HMM describes a variant form of the PEP-CTERM C-terminal protein-sorting domain, with a consensus motif IPTL replacing the more typical VPEP. A majority of these sequences have a WG (Trp-Gly) motif at positions 7-8 of the domain. Species with multiple (up to 15) copies of this domain include Acidovorax citrulli, Acidovorax delafieldii 2AN, Delftia acidovorans SPH-1, and gamma proteobacterium NOR5-3. |
| References | RN [1]
RM PMID:22070167
RT ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process.
RA Basu MK, Selengut JD, Haft DH
RL BMC Bioinformatics. 2011 Nov 9;12:434. |
| Genome Property | GenProp0996: protein sorting system, IPTLxxWG-CTERM/exosortase H (HMM) |
