HMM Summary Page: TIGR04250

FunctionSynChlorMet cassette radical SAM/SPASM protein ScmE
Gene SymbolscmE
Trusted Cutoff400.00
Domain Trusted Cutoff400.00
Noise Cutoff175.00
Domain Noise Cutoff175.00
Isology Typeequivalog
HMM Length358
AuthorHaft DH
Entry DateDec 22 2011 9:25AM
Last ModifiedFeb 10 2012 10:37AM
CommentA biosynthesis cassette found in Syntrophobacter fumaroxidans MPOB, Chlorobium limicola DSM 245, Methanocella paludicola SANAE, and delta proteobacterium NaphS2 contains two PqqE-like radical SAM/SPASM domain proteins, a PqqD homolog, and a conserved hypothetical protein. These components suggest modification of a ribosomally produced peptide precursor, but the precursor has not been identified. Of the two PqqE homologs of the cassette, this family is the closer in sequence.
Genome PropertyGenProp1029: radical SAM/SPASM system SynChlorMet (HMM)