HMM Summary Page: TIGR04302

AccessionTIGR04302
Namegeo_PqqD_fam
FunctionGeoRSP system PqqD family protein
Trusted Cutoff100.00
Domain Trusted Cutoff100.00
Noise Cutoff50.00
Domain Noise Cutoff50.00
Isology Typehypoth_equivalog
HMM Length102
AuthorHaft DH
Entry DateMar 26 2012 11:15AM
Last ModifiedMar 26 2012 11:16AM
CommentMembers of this PqqD-related family so far occur only in the genus Geobacter, always together with a PqqE-like radical SAM domain/SPASM domain protein and a second SPASM domain protein with traces of a degenerate radical SAM domain. The extended gene region includes a high-molecular-weight cytochrome c family protein. Besides authentic PqqD (TIGR03859), another example of a PqqD family protein occurs in the SynChlorMet cassette, again with two PqqE-like proteins. The system is named GeoRSP for its prevalence in Geobacter, its Radical SAM protein, is SPASM domain protein, and its PqqD family protein.
Genome PropertyGenProp1057: radical SAM/SPASM system GeoRSP (HMM)
GenProp1057: radical SAM/SPASM system GeoRSP (HMM)