HMM Summary Page: TIGR04347

AccessionTIGR04347
Namepseudo_SAM_Halo
Functionpseudo-rSAM protein/SPASM domain protein
Trusted Cutoff525.00
Domain Trusted Cutoff525.00
Noise Cutoff480.00
Domain Noise Cutoff480.00
Isology Typesubfamily
HMM Length390
AuthorHaft DH
Entry DateJun 28 2012 11:18AM
Last ModifiedAug 12 2012 6:56PM
CommentMembers of this family all have a C-terminal SPASM domain (see model TIGR04085), a region usually found as a C-terminal second 4Fe-4S domain of radical SAM domain (see PF04055) proteins. A majority of rSAM/SPASM proteins modify ribosomally produced peptides. In a few members of this family, the key Cys residues of the radical SAM domain have been lost, making this a pseudo-rSAM family. Members of this family are restricted so far to Haloarchaea, always occur next a member of family TIGR04031, and are often accompanied by another rSAM/SPASM domain protein. The function of this two or three gene cassette is unknown.
Genome PropertyGenProp1065: radical SAM/SPASM TIGR04347/TIGR04031 system (HMM)
GenProp1065: radical SAM/SPASM TIGR04347/TIGR04031 system (HMM)
GenProp1065: radical SAM/SPASM TIGR04347/TIGR04031 system (HMM)