HMM Seed Alignment: TIGR00342
Download Alignment>SP|O27720|THII_METTH/8-377
ILARYGEVAIKGPSVRRRFEGKLLHNIKSAFSCRAELRHGR........IFIFPEDMDEALDRLSKIFGIVSFSPAVTAE
TGFDSIED....SLREYIHELRSEGLLTSRTPFAIRCRRVGEHDFT..SQEMAAFAGSVVVGEIG.APVDLGNPDLEIHL
EIR.EDETYIYHRVIPGPGGLPAGTQGKVVALLSGGIDSPVATYLMMKRGCQVVAVHMDNAPFTGEEAEEKVEKIAAKLA
EYSAGVEFKLRTFSYGRYLESCRRGAPEKMTCVLCKFGMYHLAEMVAEEEGALAIVDGSSLGQVASQTLPNILATRMGVN
IPILS.PLIGMDKVEIENLAKRIGTYDISVIPDGGCSAVPA..HPSTASPPEAVMEASEKINV..KEEVAE
>SP|Q58341|THII_METJA/11-381
ILVRYGEIGLKSDPIRKNLEEILRKNIIKLLRKYEIDAEVKILHRKLLVKINTKDKEDLALKLLKKVAGIVSYSPVYECP
LDINEIVSFAVQIMKKKLKTLNKE.....KVTFAVKTKRSYK.KFPFTSVEVNKKVGEAIVEKLG.LEVDLENPDIVLGI
EIL.NDGAYIFTEKYEGIGGLPAGSQGKVLCLISDGIDSPVAAFMMIRRGCRAVLLHLKMSEEALNKVRKIVEVLSD..Y
DTELEFVVYDYKKDIEDIVEKLKSIKKENYTCIFCKRKMLKVAEKYAKYLDCDAIVTGDNLGQVASQTLKNLRVISENIN
YPILR.PLIGLDKNDIVKIAKEIGTYEISTEKEIKCPYLPK..HPKTIAKPEEVKKIKEKVK......LV.
>SP|O29382|THII_ARCFU/6-365
AVVHYGEIGIKGK.NREFFERKLIEAIKRATG.MRVRRKYG.........RIEVEYREGLESRMAKIPGIRYFGVGFKTE
LNLESI.......KKAALSVLPES.....FKTFKVDTSRSNK.NFPMNSVEVNRKVGAFIVEKTG.KKVDLTNPDVTVWI
EIC.EKEAYVYSKRYEGIGGLPVGVAGKVVALISGGIDSPVAAFMAMKRGCEVVAVHFFNQTMHSPKVREKIRMLAE..K
LAEYQGKIKLYMVPFKEVQFEIINRVPPKLRMVVYRRSMMRMANLIAEKEGCKAVVTGDSLSQVASQTLDNINVIYSASK
LAVLP.PLIGMDKEEIVAIAKRIETYEISILPYEDCCSFMVAQHPETRAKIEDVVKYEGFEEL..ERKAVE
>SP|O34595|THII_BACSU/6-358
ILIRFGEISTKGK.NRKSFIERLKQNIRLVLKDYPNLKYFS.NRDR.MTITLNGEDPEALFPHLKQVFGIQSFSLAIKCD
SRLDDIK....ATALKAIKDQYKP.....GDTFKVATKRAYK.QFELDTNQMNAEIGGHILRNTEGLTVDVRNPDIPLRI
EIREEATFLTIRDE.KGAGGLPVGSAGKAMLMLSGGFDSPVAGFYAMKRGLSVEAVHFFSPPYTSERAKQKVMDLAK..C
LSRFGGSMTLHIVPFTKTQELIQKQIPENYTMTATRRLMLQIADRIREKRNGLAIITGESLGQVASQTLESMYAINAVTS
TPILR.PLIAMDKTEIIEKSREIGTYETSIQPFEDCCTIFTTAKPRKLLP.....................
>SP|P77718|THII_ECOLI/4-377
IIKLFPEITIKSQSVRLRFIKILTGNIRNVLKHYDETLAVVRHWDNIEVRAKDENQRLAIRDALTRIPGIHH..ILEVED
VPFTDMHD....IFEKALVQYRDQ...LEGKTFCVRVKRRGKHDFS..SIDVERYVGGGLNQHIESARVKLTNPDVTVHL
EVE.DDRLLLIKGRYEGIGGFPIGTQEDVLSLISGGFDSGVSSYMLMRRGCRVHYCFFNLGGAAHEIGVRQVAHYLWN..
RFGSSHRVRFVAINFEPVVGEILEKIDDGQMGVILKRMMVRAASKVAERYGVQALVTGEALGQVSSQTLTNLRLIDNVSD
TLILR.PLISYDKEHIINLARQIGTEDFARTMPEYCGVISK..SPTVKAVKSKIEAEEEKFDFSILDKVVE
>SP|P47612|THII_MYCGE/9-376
LVARYGELVLKGK.NRSYFTKQLKINIKKAFKKLEINNSIVYEFDRIVVFDIKKEQRAILQELFSFLPGISLF..FFASQ
IVREEN......KLLDLLFNLFKD.....FNSFKLEVKRRDK.NFAENSSNFKKYLAVKLFEKYQ.LKGVINNPEIIANI
EIL.KEHFLVFTERFKGKGGLPVYSSGKALVLLSGGIDSPVAASLVMQRGFNIDFITFINEPNKNQKTIEKITRLANLIS
FNKTICSGKLLVFDFTAIQKELIHISNESYRIVLMRRVFYKAASMFKYD....CLVTGEVLGQVASQTIENLKVIQSATP
DTFIVRPLIGFSKDKIIELAKFFNTFDISIEQHLDTCSEFSPKNPTTKAKLINVEKLESELIF..LNDLIE
>SP|P75228|THII_MYCPN/11-378
LICRYGELVLKGK.NRLQFVKQLKKNVKQAFKKLSITNPVDYQFDMLVVGEVISTQRSLLKNLFTRLPGLSVC..LFALQ
IPHDEA......QLLALLQQVVQS.....HPSFKIEVRRRDK.LFACNSSAFKKYLALQLWEKYQ.LKGKLVDPAITVHV
EVT.KEHFLIISESFNGIGGLPVFTSGTALALLSGGIDSPVAASLVLQRGFNVDFITFINEPGHNAATIGKIQRLANLVS
LNQTLCTGRLFVFDFTDLQKELSHISLEGYRIVLMRRCFYKIASLFKYD....CLITGEALGQVASQTIDNLKVIQAVVP
NTFVIRPLIGLSKDKIIEWAKALGTFETSIEHHMDTCTVFAPKKPTTKAKLAIVEKLESELLF..VRELIE