HMM Seed Alignment: TIGR00580

Download Alignment

>SP|P30958|MFD_ECOLI/145-1079
LDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELP....YRLDFFDDEIDSLRVFD.VDSQRTLEEVEAINLLPAHEFPT
DKAAIELFRSQWRDTF.EVKRDPEHIY.............QQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTL....
.LVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQ.....SLWLRVDELFS..................ELKNWPRV
QLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMR...
......LDEASDRGRYLMIGAAEHGFVDTVRN.LALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLE
HGVGRYAGMTT.LEAGGITGEYLMLTYANDAK.........LYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKA
AEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEV
AMRAAFLAVDNH....KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKL
LQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREY
DSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIET
GIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIR
GAGELLGEEQSGSMETIGFSLYMELLENAVDALKAG......REPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFY
KRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLE
>SP|Q55750|MFD_SYNY3/197-1120
LARLGYERGSTVETEGQWSRRGDIVDIFPVSAELP....VRLEWFGDELEKIREFD.PASQRSLDDLTGLVLTPTSF.DQ
VIEPALNAQAIDLSAWGEDAET.....................EQLFGKEGLQRFLGLAFTE.PACLLDYLPTETV....
CVLDEPEQC...AAHSER.WFEAVAQDWSALQLPNLP......QLHRNFSALG.......DRL.....KTDFQYITLSEI
HEANGD.SLDISARPIPTMPHQFAKLAEILRGKREIYSGLTLGQYSTWLIS....AQPSRTVSLLQEHDCAVQFIANPRD
YPAIEKSQIQRTAVTLKYSGLAELEGFILPTFRLVLVTDRELFGQHALATPEYVRKRRRATSKQVDINKLSPGDYVVHKS
HGIGKFLKLDA.....LANREYLMIQYADG..........ILRVPADSLDSLSRFRHTGTRPPELHKMGGKVWEATKNKV
RKAVKKLAVDLLNLYAKRAKQVGYAYPPDSPWQQELEDSFPYQPTPDQLKAVQDVKRDLEGDRPMDRLVCGDVGFGKTEV
AVRAIFKAVTSGN...KQVALLAPTTVLTQQHYHTLKERFAPYPITIGLLNRFRTASEKKEILAKLKSGELDIVVGTQQV
LGTSVKFKDLGLLVIDEEQRFGVNQKEKIKTLKTEVDVLTLTATPIPRTLYMSLSGIREMSLITTPPPSRRPIKTHLSPY
NPEVIRTAIRNELDRGGQVFYVVPRIEGIEELGGQLRQMVPSARIAIGHGQMEESELESTMLAFNDGEADILVCTTIIEA
GLDIPRVNTIIVEDAQKFGLAQLYQLRGRVGRSGIQAHAWLLYPNQKQLTEKARLRLRALQEFSQLGSGYQLATRDMEIR
GVGNLLGAEQSGQMEAIGYEFYMEMLQDAIKEI........QGQEIPKVE...DTQIDLPLTAFIPSDYIPDLEEKMAAY
RRITSIESTDELPKIALDWGDRYGMLPSPVEELFKVVKLKHLAKSLGFSRIK
>SP|P96380|MFD_MYCTU/171-1133
LVELAYTRVDMVGRRGEFAVRGGILDIFAPTAEHP....VRVEFWGDEITEMRMFS.VADQRSIPEIDIHTLVAFACREL
LLSEDVRARAAQLAARHPAAESTVTGSASDMLAK........LAEGIAVDGMEAVLPVLWSDGHALLTDQLPDGTP....
VLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAEN.....QAPVDVEQLGGSGFVELDQVRAAAARTGHPWWTLSQL
SDESAI.ELDVRAAPSARG.HQR.DIDEIFAMLR...AHIATGGYAALVAPG..TGTAHRVVERLSESDTPAG.......
..MLDPGQAPKPGVVGVLQG.PLRDGVIIPGANLVVITETDLTGSRVSAAEGKRLAAKRRN..IVDPLALTAGDLVVHDQ
HGIGRFVEMVER.TVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSRY..VGGQAPALSRLGGSDWANTKTKA
RRAVREIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEI
AVRAAFKAVQDG....KQVAVLVPTTLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRL
LQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPH
DDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVET
GLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIR
GAGNVLGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEGY
RRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDVT
>GP|3329208|AE001346/150-1032
CKSLGYRHEALAREKGDFAFRGGIVDIFPLSSPEP....FRIEFWGDRVSSIRSYN.PSDQLSTGKLSQITISPATA..I
IPTNKLSHSLLDY.......................................FKAFPLCIFDGLSSLEDNFSDIAG....
ILASLPKRFMPIQDLCQRILKEFTPLFFEEKTFPNLIS.....HKDTGFSIEA................F.HKKISVQRV
SLP....FIYPPALIETSG.....EQNPLLAFLKT.FQDFCAGRTLSLALY......CSNTKSLKEAHDLAAA.......
.......CIPNTQIYDHPTT..LSSSFALVEAGFAAVSLSEFAASKVLRRQKQRNYFSTTT...EEVYIPVPGETVVHLH
NGIGKFIGIEKKPNHLNIETDYLVLEYADKAR.........LYVPSDQAYLISRYVGASEKAPDLHHLNGAKWRRSRELS
EKSVILYAEKLIQMEAQRSTANSFIYPPHGEEVIKFAESFPYEETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEI
IMRAAVKAVCDGH...KQVIVMVPTTILANQHFETFSQRMAGLPITIGLLSRFSQGKTMKKTLEDIAQGRIDILIGTHKV
INKAIEFHNPGLLIIDEEQRFGVKAKDSLKERFPTIDCLTVSATPIPRTLYLSLSGARDLSLITMPPLDRLPVSTFVMEH
SEETLSAAIRHELLRGGQVYVIHNRIESIFRLGETIRTLIPEARIGVAHGQMHANELASIFYKFKTQQTNVLVATALIEN
GIDIPNANTILIDHADKFGMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPTSKRLEALNK.QEYGGGMKIALHDLEIR
GAGNILGTDQSGHISAVGFNLYCKLLKKAVAALK.......HKQKPMLFHD..DIKIEFPYHARIPEDYIDLASMRIEFY
QKIGNAESEEELEAIEEELRDRFGPSPEAISWLFALARIRLIAQEYHLSSIK
>SP|P37474|MFD_BACSU/157-1098
LVEVGYERSDMVSAPGEFSIRGGIIDIYPLTSENP....VRIELFDTEVDSIRSFN.SDDQRSIETLTSINIGPAKELII
RPEEKARAMEKIDSGLAASLKKLKADKQKEILHANISHDKERLSEGQTDQELVKYLSYFYEK.PASLLDYTPDNTL....
LILDEVSRIHEMEEQLQKEEAEFITNLLEEGKILHDI......RLSFSFQKIVAE.....Q.......KRPLLYYSLFLR
HVH.HT.SPQNIVNVSGRQMQSFHGQMNVLAGEME..RFKKSNFTVVFLGAN..KERTQKLSSVLADYDIEAAMTD....
.....SKKALVQGQVYIMEG.ELQSGFELPLMKLAVITEEELFKNRVKKKPRKQKLTNAER..IKSYSELQIGDYVVHIN
HGIGKYLGIET.LEINGIHKDYLNIHYQGSDK.........LYVPVEQIDQVQKYVGSEGKEPKLYKLGGSEWKRVKKKV
ETSVQDIADDLIKLYAEREASKGYAFSPDHEMQREFESAFPYQETEDQLRSIHEIKKDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIGDG....KQVALLVPTTILAQQHYETIKERFQDYPINIGLLSRFRTRKEANETIKGLKNGTVDIVIGTHRL
LSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEY
NGALVREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIET
GVDIPNVNTLIVFDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLTIR
GAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGD......TAKTEQFET..EIDVEL..DAYIPETYIQDGKQKIDMY
KRFRSVATIEEKNELQDEMIDRFGNYPKEVEYLFTVAEMKVYARQERVELIK
>OMNI|TP0344/155-1073
LMQWGYARVDHVSACAEFSLRGEILDIAAAAQAADNTQAYRIVCDFNTIERIHILA.VSTCAVLQEVSACTLYAAKE..I
LWSEERIAFLHQNLQKLSECP.AHC........VPCIEELTHRKTYE...GEEMFYPLCFER..PTCVLEYFRHSPSPPS
VFYLDYERQHNGARALQDECRNLYHKMQLAHEHVP.......ARWYPQPEHIVLDFS.............AVCALHLHTV
YFTHFFPQLPACESICLASDPARSFFGNIPYFKEELLRLSKDGWHVFVFAES..EQQALRIRALVKG....CDVTVLPCA
....LSAGFSIPALK..................ILIVQEGEIFGRRRKTPQSVQRARSTPI...DTFVELNPGDYVVHAQ
YGIGLFKGIER.IKTAQSERDYVNLLYAQEET.........ILIPIEQAHLVQRYIGNEGNKPHLDSLGSKSWETRKARV
KKSVENIAQKLVELYSLRKTTRGHAFPKDDEWQYAFEAAFPYEETDDQRICIEEVKQDMQEAVPMDRLVCGDVGYGKTEI
AMRAAFKAVMGG....KQVVFLTPTTLLVEQHFRTICNRFKHFPVRIEKLSRFVPKSEQKDILAKLAHGDIDLIVGTHRL
IQKDVSFKDLGLMILDEEQRFGVQDKEKLKQMKTNVDCLSLSATPIPRTLHMGMLKIRDMSLLTTPPEGRLPIETVIQQF
DPNLVATAIRKELDREGQIFYLHNRIENLESVKCMLQKLVPELSICVAHSLMGSEELEDIFERFYQKTFQLLLSTTIIEN
GIDVPNANTIIIDRADMYGVSQLYQLRGRVGRSDKKAYAYLLYYHDVALSDLAIKRLQVISDFTDLGAGFKVALKDMEIR
GVGNLLGKEQSGDIYSVGFDLYVQLLEEAIERLQ.........HAPNEQRI..ETVIDLNYRGFIPHTYIAADEIKMELY
KKIAAAHTHEELERIRTETITRFGPIPEEAAGLFTVAEIKVRCEKLAILSLK
>SP|O51568|MFD_BORBU/158-1056
LITLGYEKTLRVTIPGEFTVKGEIIDIYPFGEQNP....IRIALNFDKIEEIKKFNPLTQLKHDNEILEFQILPKKE..I
IWDDKTINTLKTKIKSVEYK..............KILEELDFKKETK...TEEMFYPLVAN...TYLGDEIEKHTP....
IVNFEINNFEKEIEKIHQEYEKLYKEAEEAGKNI............IDPKRILLNY...............K.TFNLKSD
VLFSKIKSLKSKETIEFKIESERNFFSNIALTKEEFENWLKNGFKIIIAAES..ESQKEKLKYIFKEL...PKVSIEVLK
....ISSSLIIEKEK..................IAIILESNIFNTGQKINKAFESSKTKAI...DSFVEIEKNSHVVHIN
HGIGIFRQIKR.IKTSSLEKDYIEIEYAEGEK.........LFIPIEQTNLIQKYIGSDPKNIKLDKISSKTWIKNKANA
KKRIEEIADKLIELYSKRESIKGIKYPEDNELQLLFESEFPYDETPDQIRAIKEIKEDMMSFKVMDRLLCGDVGFGKTEV
AMRAAFKAVMGN....KQVIVLSPTTILAEQHFNTFKKRFKNFPIKIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKI
LSKKFTCKNLGLIIIDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIEAYLESF
SELLIKHAIESELSRDGQVFLVNHNIEELYYLKTLIERLTPYARIAIIHGKLTGEEIENIMHNFIKKAYQILLATTIIEN
GIDIPNANTIIINNANKFGLAQLYQLKGRVGRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAMKDMEIR
GVGNLLGREQHGEIESIGLDYYLTMLNKAIEKKM.........GKISSDEE..EVDIKINYSGFIPENYAKNEQDKILIY
KKIFKIQTEEESKKIRSELHNDFGPIPEEINSLLMLAELKILAKDLNITKLK
>SP|O52236|MFD_MYXXA/180-1129
LVRMGYQNSPLVEDVGTFSVRGDLLDVFSPLYDKP....VRLEFFGDTIESIRAFD.PQSQRTVDALKEVDLVPARE..V
LLTDETRPRAESAARAVADRINLPT........IKLREQLDALREGLPGFGMEGLLPGFFEDGLSTVFDFLRDWSPEAPV
IYLDDPLGQDRAADTLWEELERSHGAAEARQELICPPLEHFLSREDVNQRMQSFRVL.............EGGGLSLAQT
ERPPVHFSFGGTQDLREAILAHHGEEGALSPLVERLERWRELRVACVVACGT..LSQADRLKRLLMDRNVMVKVHTEPLE
....DAVALYEPSIRAHLFTGEVSHGFVDGPGGLAVLADEEIFGARARRRPKRSKKLDAFG...SGFGDLKEGDLIVHTD
FGIGRYAGLTK.MEVNGVPGDFLVLEYAGRDK.........IYLPVGRMRLIQKFSGGDPTQVQLDKLGTTSWEKTKKRV
KEQLLKMAAELLQIAAARKAHPGHAFSAPDRYFAQFEADFEFEETPDQAKAIEDVLADMQKPEPMDRLVCGDVGYGKTEV
AMRAAFKAALDR....KQVAVLVPTTVLAQQHFLSFKKRFADYPVTVEVISGLKKAPEVREILKRAKEGKVDILIGTHKL
LGGEVAFKELGLMIVDEEQRFGVKQKESLKKWRSQIDVLTLTATPIPRTLHMSMSGVRDMSIIATPPQDRRAIRTFVMKY
EDTVVKEAIEREVARGGQVFFVHNRVESLPSIETQLRALVPQVSIGVAHGQMGEGQLEKVMLAFTEKKYQVLLCTSIIES
GIDISSANTMIVNRADQFGLAQLYQLRGRVGRSKERAYAYLLVPSRRAVTKDAQRRLEVLQNFTELGAGFSIASHDLEIR
GAGNLLGDKQSGAIAEIGFDMYAQLLEEAVAEMQ.........GQPPKVQI..EPDVTLPMPALIPDDYVSDVHQRLVFY
KRFSQASHPDEVTDLRAELVDRYGEAPDEVDHLSELTLLKIDMRDLRLRGLE
>SP|O05955|MFD_RICPR/132-1056
LVENSFTRNTSSIDVGEFAVRGEIIDIILPGPKGY.....RINFSWDYIESIKEFD.INTQISTKYCAELVISPANE..I
VLNSETIGNFKNNYLRNFGVNHTDN............PLYEAVISGRKFAGYEQLLPLFYYS.CSSLVDYLNNPIC....
IFDNLSKQA...ILEFENSYNDFYLARSKANKLKVNN.....FYPTLSPTSLYFT................ASAITELLE
QKNNILISYENSEQASLIGNISSISFIEKKTIFDKLFEIIKANFHKKIIICSSVLSSFERIKSIIQNYEYTFN.......
.....EINKLDEAKASVINIGIIPLNQSFYTKEYLFITSSELLEEKTLYTNTNKKLKNILL...E.LDNLKEGEFVVHKD
HGIGQFLKLEA.FKIQGKLHDFLKILYFGNDK.........LYVPVENIEVIKKY..G.SDNAELNKLGSVAWNKSKAKL
KNRIKEISLHLIQIAAKRKLNISTPIELDLEAYDKFCANFPFSETEDQLTAINDIREDLTNGMLMDRLICGDVGFGKTEV
AMRAVFMVAKSLNEYLPQVAVVVPTTILCSQHFSRFIERFKGFGLNIKQLSSVISSKEANIIRLELASGKINIIIGTHAL
LHKNTKFFNLKLLIIDEEQHFGVSQKEFLKSLKSSTHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSVMPF
DPVIIRDALLREHFRGGRSFYVAPRIKDMEDIEKQLKQIVPELSYKIAHGKMTPSKIDEVMSEFYVGKFDILISTTIIES
GIDIAEANTMIIHKADTLGLSQLYQLRGRIGRGKIRGYAYLTVASNKKITSHSLRRLEIIQNSCSLGSGFTIASHDADLR
GFGNLIGEEQSGQIKEVGTELYQEMLEEQIALLK.........DDPIVLEQAFIPNINLGLSVFIPDSYVSDSALKIGLY
RRIGNLSNEMEVEKFKDEMIDRFGLLPIEFNNLLDIVKIKLLCFKLNIENLD
>SP|O26066|MFD_HELPY/123-954
LFYYGYEILDLVEVEGEASFRGDIVDIYAPNSKAY.....RLSFFDTECESIKEFDPITQMSLKEDLLEIEIPPTLFS..
LDESSYKDLKTKVE.................................................QSPLNSFSKDLTS....
....FGLWFLG.........EKAQDLLIVYKSIISP.......RALEEIQELA......................SLNEL
DCER....FKFLKVLENAQG...YEDLEIHAHALEGFIALHSNHKITLLAPN..KTILDNAISALDAG.......N....
.....MECVIAPFVLN...................FKTPDGIFISLNSFERKKKRQKSKLA.....LNELNPGEWVVHDD
YGVGVFSQLVQ.HSVLGSKRDFLEIAYLGEDK.........LLLPVENLHLIARYVAQSDSVPAKDRLGKGSFLKLKAKV
RTKLLEIASKIIELAAERNLILGKKMDVHLAELEVFKSHAGFEYTSDQEKAIAEISKDLSSHRVMDRLLSGDVGFGKTEV
AMHAIFCAFLNG....FQSALVVPTTLLAHQHFETLRARFENFGVKVARLDRYAS..EKNKLLKAVELGQVDALIGTHAI
LG..AKFKNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKTPPTDRKPSRTFLKEK
NDELLKEIIYRELRRNGQIFYIHNHIASILKVKTKLEDLIPKLKIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVES
GIHLPNANTIIIDNAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESVAYHDLEIR
GGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELS.........GGKKRLEK..SVEIQLGVSAFLNPELIASDSLRLDLY
RRLSLCENTDEVGQIHEEIEDRFGKIDDLSAQFLQIITLKILANQLGIIKLS