HMM Seed Alignment: TIGR00600
Download Alignment>SP|P07276|RAD2_YEAST/1-1030
MGVHSFWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNSHITGFFRRICKLLYFGIRPVFVFDGGV
PVLKRETIRQRKERRQGKRESAKSTARKLLALQLQNGS...NDNVKNSTPSSGSSVQ.......................
..IFKPQDEWDLPDIPGFKYDKE....DARVNSNKTFEKLMNSI.NGDGLEDIDLDTINPASAEFEELPKATQYLILSSL
RLKSRLRMGYSKEQLETIFPNSMDFSRFQIDMVKRRNFFTQKLINTTGFQDGGASKLNEEVINRISGQKSKEYKLTKTN.
..NGWILGLGANDGSDAQKAIVIDDKDAGALVKQLDSNAEDGDVLRWDDLEDNSLKIVRHESSNATTAPQKRSNRSEDEG
CDSDECEWEEVELKPKNVKFVEDFSLKAARLPYMGQSLNNAGS.....KSFLDKRHDQASPSKTTPTMRISRISVEDDDE
DYLKQIEEIEMMEAVQLSKMEKKPEADDKSKI.....AKPVTSKG.......TE......ARPPIVQYGLLG........
...AQPDSKQPYHVTNLNSKSESVIKRTSKTVLSEFRPPSQQEDKGAILTEGEQNLNFISHKIPQFDFNNENSLLFQKNT
ESNVSQEATKEKSPI.........PEMPSWFSSTASQQLYNPYNTTNFVEDKNVRNEQESGAETTNKGSSYELLTGLNAT
EILERES.......EKESSNDENKDDDLEVLSEELFEDVPTKSQISKEAEDNDSRKVESINKEHRKPLIFDYDFSEDEED
NIVENMIKEQEEFDTFKNTTLSTSAERNVAENAFVEDELFEQQMKD...KRDSDEVTMDMIKEVQELLSRFGIPYITAPM
EAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMFHEKNYVEFYDAESILKLLGLDRKNMIELAQLLGSDYTNGLKG
MGPVSSIEVIAEFG.....NLKNFKDWYNNGQFDKRKQETENKFEKDLRKKLVNNEIILDDDFPSVMVYDAYMRPEVDHD
TTPFVWGVPDLDMLRSFMKTQLGWPHEKSDEILIPLIRDVNKRKKKGKQKRINEFFP....REYISGDKKLNTSKRISTA
TGKLKKRK
>GP|5020|emb|CAA47291.1/1-1022
MGVSGLWNILEPVKRPVKLETLVNKRLAIDASIWIYQFLKAVRDKEGNQLKSSHVVGFFRRICKLLFFGIKPVFVFDGGA
PSLKRQTIQKRQARRLDREENATVTANKLLALQMRHQAMLLEENNKKATALANASVQNERQMPSSMTLDNSEIKPVLNQR
KNYLKP.DPYQLPEMD.VSFDKLGSSYDPRIMSQDELTQYVSSFTKIEDINLFDFSNIDFDSELFQSLPDTDKYSILSAA
RLRSRLRMGLSSEQLSEMFPNRMDFSRFQIERLKERNDLTQRLMDFTGMNEFGPS........RVVSEKNREYILVKNEG
AEGGWALG..VISGSTNNEPIIIDDEATKLSSNLID..EDEDEAFYDVPLPSRSHSMNPRELVAAKLKEIKENSFSENQ.
.QSDEADYN..........VTDDLILQLATQQSLEENKKSKEL.....FSLSASEFDKLNSEKKTFEILSTDIPAEDSMN
SLLNDEENLKLEHVGDVS..ND.SLAFAEKKH.....PENGTSIF.......MD......ALPSASRE..K.........
...KTNDLIDPLPFQPMDWGKSIFFEKLKKP......TETFMDSKTDIPSEAPDNSKLVED.......TNLHTINATVNI
ES..DLDAAKPGIEN.........PIISPLLPVKDDEKDLDLRELNPLEPFENMKEQADDGTVTNPLNVSSD.....KAM
SVYLLSS.......ENAKDTGDIKSESIDAVLPTLETSSPSLSIPTDFQKEASPNKGAAALSSKVEPEVVEKLLDEEEEE
MIIR.MAEEEKEYDRFVSELNQRHETEEWNQEAFEKRLKEAQKSKKGSEKRDADEVTQVMIKECQELLRLFGLPYIVAPQ
EAEAQCSKLLELKLVDGIVTDDSDVFLFGGTRVYRNMFNQNKFVELYLMDDMKREFNVNQMDLIKLAHLLGSDYTMGLSR
VGPVLALEILHEFPGDT..GLFEFKKWFQRLSTGHASKNDVNTPVKKRINKLVG.KIILPSEFPNPLVDEAYLHPAVDDS
KQSFQWGIPDLDELRQFLMATVGWSKQRTNEVLLPVIQDMHKKQFVGTQSNLTQFFEGGNTNVYAPRVAYHFKSKRLENA
LSSFKNQI
>EGAD|96058|104063/1-1042
MGVQGLWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENAHLLTLFHRLCKLLFFRIRPIFVFDGDA
PLLKKQTLAKRRQRKDSASIDSRKTTEKLLKTFLKRQALKTAFRSSR..HEAPPSLTQVQRQ..................
......DDIYVLPPLP......EEEKHSSEEEDEKQWQARMDQKQALQEEFFHNPQAIDIESEDFSSLPPEVKHEILTDM
KEFTKRRR....TLFEAMPEESMDFSQYQLKGLLKKNYLNQHIEMVQKEMNQQHSG.QIQRQYQDEGGFLKEVESRRVVS
EDTSHYILIKGIQGKK.MDEVDS..ESLPS.SSMVHSVSSMLKSSPHEKVKPEREP..EAAPPSPRTLLAIQAAMLGSSS
EDEPESREGRQSKERNSGATADAGSISPRTRAAIQKALDDDMD.....EKVSGSSDVQTGGDLAEKMLLGSRLEQEEHAD
ETAERGGGVPFDTAPLTPSVTEVKECVTSGSS.....ANEQTDSAHSFTTASH.....RCDTPKETVSLAS.........
..AVKEASQISSECEVEGRPAALSPAFIGTPSSHVSGVLSEREPTLAPPTTRTHSDQGIDIHPEDPELQNGLYPLETKCN
SSRLSSDDETEGGQNSASEVIGPVPAPKACSTVHVPAEAMSNLENALPSNAEERGDFQET.IQLREVPEAAARELISAPK
PMGPMEM.......ESEESESDGSFIEVQSVVSNSELQTESSEASTHLSEKDAEEPREILEEGTSR.DTECLLQDSSDIE
AMEG.HREADIDAEDMPNEWQDINLEELDALESNLLAEQNSLKAQKQQQDRIAASVTGQMFLESQELLRLFGVPYIQAPM
EAEAQCAVLDLSDQTSGTITDDSDIWLFGARHVYKNFFNKNKFVEYYQYVDFYSQLGLDRNKLINLAYLLGSDYTEGIPT
VGCVTAMEILNEFPGRGLDPLLKFSEWWHEAQNNKKVAENPYDTKVKKKLRKLQ....LTPGFPNPAVADAYLRPVVDDS
RGSFLWGKPDVDKIREFCQRYFGWNRMKTDESLYPVLK...HLNAHQTQLRIDSFFRLAQQEKQDAKLIKSHRLSRAVTC
MLRKEREE
>SP|P28715|XPG_HUMAN/1-1029
MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENPHLLTLFHRLCKLLFFRIRPIFVFDGDA
PLLKKQTLVKRRQRKDLASSDSRKTTEKLLKTFLKRQAIKTAFRSKR..DEALPSLTQVRRE..................
......NDLYVLPPLQ......EEEKHSSEEEDEKEWQERMNQKQALQEEFFHNPQAIDIESEDFSSLPPEVKHEILTDM
KEFTKRRR....TLFEAMPEESDDFSQYQLKGLLKKNYLNQHIEHVQKEMNQQHSG.HIRRQYEDEGGFLKEVESRRVVS
EDTSHYILIKGIQAKT.VAEVDS..ESLPS.SSKMHGMSFDVKSSPCEKLKTEKEP..DATPPSPRTLLAMQAALLGSSS
EEELESENRRQARGRNAPAAVDEGSISPRTLSAIKRALDDDED.....VKVCAGDDVQTGGPGAEEMRINSSTENSDEGL
KVRD.GKGIPFTATLASSSVNSAEEHVASTNE.....GREPTDS.................VPKEQMSLVH.........
..VGTEAFPISDESMIKDRKDRLPLESAVVRHSDAPGLPNGRELTPASPTC.TNSVSKNETHAEVLEQQNELCPYESKFD
SSLLSSDDETKCKPNSASEVIGPVSLQETSSIVSVPSEAVDNVENVVSFNAKEHENFLET.IQEQQTTESAGQDLISIPK
AVEPMEI.......DSEESESDGSFIEVQSVISDEELQAEFPETSKPPSEQGEEELVGTREGEAPA.ESESLLRDNSERD
DVDGEPQEAEKDAEDSLHEWQDINLEELETLESNLLAQQNSLKAQKQQQERIAATVTGQMFLESQELLRLFGIPYIQAPM
EAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYRNFFNKNKFVEYYQYVDFHNQLGLDRNKLINLAYLLGSDYTEGIPT
VGCVTAMEILNEFPGHGLEPLLKFSEWWHEAQKNPKIRPNPHDTKVKKKLRTLQ....LTPGFPNPAVAEAYLKPVVDDS
KGSFLWGKPDLDKIREFCQRYFGWNRTKTDESLFPVLK...QLDAQQTQLRIDSFFRLAQQEKEDAKRIKSQRLNRAVTC
MLRKEKEA
>SP|P14629|XPG_XENLA/1-1059
MGVQGLWKLLECSGRPINPGTLEGKILAVDISIWLNQAVKGARDRQGNAIQNAHLLTLFHRLCKLLFFRIRPIFVFDGEA
PLLKRQTLAKRRQRTDKASNDARKTNEKLLRTFLKRQAIKAALSGNKQSNEELPSFSQVPRKET................
......EDLYILPPLE......DNENNSSEEEEEREWEERMNQKQRLQEDFFANPSSVDIESEEFKSLPPEVKHEILTDM
KDFTKRRR....TLFEAMPEDSSDFSQYQLKGLLKKNDLNKCIDNVRKELNQQYSG.EVQAQFESEGGFLKEVETRRLVS
EDDSHYILIKGIQSKQEEKKVDSPPQSITFNSSQTPKTYLDLKLASAHKTKPLQTSSAEAAPPSPRTLFAIQEAMAESWD
HEKHEKP........SVSGCEAEGNVSPRTLQAIYQVLAEDEAGESNKIKVVLQSDEER..KPKTKVLVISSSDEEDDCL
NYQD.GTKTTLGASLIKSISPSSMQCQESTADSLPNYTRSKPVSQIEEPMADHNLQGDNCNVPNAKDKLIVPPSLGNVDK
PIILSNTIPVNSEFRIPLLPVNMSMRETVIIPNNTGSLGSSRYISLERDAT..K..QGFSDNPVGDLVRS...PDEPALN
ASSALSDRKTSATQSLLCNN....IECTEQSMVQGCSNTLDVTQTTQPSGGSEVNKPAEYNPQDKKVFGSNDSSAMYVPM
TPESIIVSDEEFVNEKEDSDSDDSFIEVDSEFSTSNSQHVVFKEPGD.TRETATNFQAVEEGNSGS.QDIPLEHDSGEPH
EQSN..SEESKDLDDVSNEWQDISVEELESLENNLYVQQTSLQAQQQQQERIAATVTGQMCLESQELLQLFGIPYIVAPM
EAEAQCAILDLTDQTSGTITDDSDIWLFGARHVYKNFFSQNKHVEYYQYADIHNQLGLDRSKLINLAYLLGSDYTEGIPT
VGYVSAMEILNEFPGQGLEPLVKFKEWWSEAQKDKKMRPNPNDTKVKKKLRLLD....LQQSFPNPAVASAYLKPVVDES
KSAFSWGRPDLEQIREFCESRFGWYRLKTDEVLLPVLK...QLNAQQTQLRIDSFFRLEQHEAAG...LKSQRLRRAVTC
MKRKERDV