HMM Seed Alignment: TIGR00633
Download Alignment>GP|178747|M81955/62-317
LKICSWNVDGLRAWIKKK.........GLDWVKEEAPDILCLQETKCSE.NKLPAELQ.......ELPGLSHQYWSAPSD
K.EGYSGVGLLSR..QCPLKVSYGIGD.......EEHDQEGR.........VIVAEFDSFVLVTAYVPNAG.RGLV.RLE
YRQ.RWDEAFRKFLKGLAS..RKPLVLCGDLNVAHEEIDLRNPKGN......KKNAGFTPQERQGFGELLQAVPLADSFR
HLYPNTPYAYTFWTYMM.NARSKNVGWRLDYFLLSHSLLPAL.CDSKIRSKALG....SDHCPITLYLA
>SP|P23196|APE1_BOVIN/61-316
LKICSWNVDGLRAWIKKK.........GLDWVKEEAPDILCLQETKCSE.NKLPVELQ.......ELSGLSHQYWSAPSD
K.EGYSGVGLLSR..QCPLKVSYGIGE.......EEHDQEGR.........VIVAEYDAFVLVTAYVPNAG.RGLV.RLE
YRQ.RWDEAFRKFLKGLAS..RKPLVLCGDLNVAHEEIDLRNPKGN......KKNAGFTPQERQGFGELLQAVPLTDSFR
HLYPNTAYAYTFWTYMM.NARSKNVGWRLDYFLLSQSVLPAL.CDSKIRSKALG....SDHCPITLYLA
>SP|P27864|RRP1_DROME/427-678
LKICSWNVAGLRAWLKKD.........GLQLIDLEEPDIFCLQETKCAN.DQLPEEVT.......RLPGYHPYWLCMP..
..GGYAGVAIYSK..IMPIHVEYGIGN.......EEFDDVGR.........MITAEYEKFYLINVYVPNSG.RKLV.NLE
PRM.RWEKLFQAYVKKLDA..LKPVVICGDMNVSHMPIDLENPKNN......TKNAGFTQEERDKMTELLGLG.FVDTFR
HLYPDRKGAYTFWTYMA.NARARNVGWRLDYCLVSERFVPKV.VEHEIRSQCLG....SDHCPITIFFN
>SP|P37454|EXOA_BACSU/1-251
MKLISWNVNGLRAVMRKMD........FLSYLKEEDADIICLQETKIQ....DGQVDL.......QPEDYHVYWNYAVKK
...GYSGTAVFSK..QEPLQVIYGIGV.......EEHDQEGR.........VITLEFENVFVMTVYTPNSR.RGLE.RID
YRM.QWEEALLSYILELDQ..KKPVILCGDLNVAHQEIDLKNPKAN......RNNAGFSDQEREAFTRFLEAG.FVDSFR
HVYPDLEGAYSWWSYRA.GARDRNIGWRIDYFVVSESLKEQI.EDASISADVMG....SDHCPVELIIN
>OMNI|HP1526/1-250
MKLISWNVNGLRACMTKG.........FMDFFNSVDADVFCIQESKMQ....QEQNTF.......EFKGYFDFWNCAIKK
...GYSGVVTFTK..KEPLSVSYGINM.......EEHDKEGR.........VITCEFESFYLVNVYTPNSQ.QALS.RLS
YRM.SWEVEFKKFLKALEL..KKPVIVCGDLNVAHNEIDLENPKTN......RKNAGFSDEEREKFSELLNAG.FIDTFR
YFYPNKEKAYTWWSYMQ.QARDKNIGWRIDYFLCSNPLKTRL.KDALIYKDILG....SDHCPVGLELV
>SP|P51173|APEA_DICDI/105-359
MKIISWNVAGFKSVLSKG.........FTECVEKENPDVLCLQETKINP.S.NIKKDQ.......MPKGYEYHFIEADQK
...GHHGTGVLTK..KKPNAITFGIGI.......AKHDNEGR.........VITLEYVQFYIVNTYIPNAGTRGLQ.RLD
YRIKEWDVDFQAYLEKLNA..TKPIIWCGDLNVAHTEIDLKNPKTN......KKSAGFTIEERTSFSNFLEKG.YVDSYR
HFNPGKEGSYTFWSYLG.GGRSKNVGWRLDYFVVSKRLMDSIKISPFHRTSVMG....SDHCPIGVVVD
>SP|P45951|ARP_ARATH/276-535
VKVMTWNVNGLRGLLKFESF......SALQLAQRENFDILCLQETKLQVKDVEEIKKT.......LIDGYDHSFWSCSVS
K.LGYSGTAIISR..IKPLSVRYGTGL.......SGHDTEGR.........IVTAEFDSFYLINTYVPNSG.DGLK.RLS
YRIEEWDRTLSNHIKELEK..SKPVVLTGDLNCAHEEIDIFNPAGN......KRSAGFTIEERQSFGANLLDKGFVDTFR
KQHPGVV.GYTYWGYRH.GGRKTNKGWRLDYFLVSQSIAANV.HDSYILPDING....SDHCPIGLILK
>OMNI|NTL01MT00209/4-256
LKIISWNVNGLRAVHRKG.........FLKWFMEEKPDILCLQEIKAAP.EQLPRKLR.......HVEGYRSFFTPAERK
...GYSGVAMYTK..VPPSSLREGFGV.......ERFDTEGR.........IQIADFDDFLLYNIYFPNGK.MSEE.RLK
YKLEFYDAFLEDVNRERDS..GRNVIICGDFNTAHREIDLARPKEN......SNVSGFLPVERAWIDK.FIENGYVDTFR
MFNSDPG.QYTWWSYRT.RARERNVGWRLDYFFVNEEFKGKV.KRSWILSDVMG....SDHCPIGLEIE
>OMNI|BB0534/1-251
MKLISWNVNGIRAVLKKG.........FLEFVKEYTPDILCIQETKALR.EQLPKDL........ILENYYSYFSNSKIK
...GYSGVCIYSK..VEPISVRL.LGE.......EIFDNEGR.........GLVACYDDFILVNGYFPNSQ.VLRR.RLG
YKLDFLSYVENLADSLVCD..GKNVVICGDFNIAHTEIDLISPDSN......RDSPGYYIEETTWLDD.FLNKGYVDTFR
IFNKDPG.YYTWWSYRT.RARERNMGWRIDYFIVNEFFKRNV.EKSLILDKVMG....SDHCPVFLELA
>OMNI|TP0125/5-263
QRIISWNVNGIRAIERKD.........FLSWLAREAPDVLCLQEIKAHE.SQLSAALRAPVWSAGAGGTYYTYFHSAQRP
...GYSGTALFSK..RAPDAVRF.FGV.......PAFDCEGR.........MLAARFGELTVVSAYFPNAQ.EGGK.RLA
YKLDFCAAFRAFCDEERTA..GQHVILCGDYNIAHKEIDLAHPQEN......EGNPGFLPQERAWMDT.FTEAGYADSFR
AFCTEGQ.QYTWWSYRA.RARARNIGWRIDYQCVDQAFLARV.TSSQILSEVTG....SDHCPVCLTYA
>SP|P09030|EX3_ECOLI/1-267
MKFVSFNINGLRARPHQL..........EAIVEKHQPDVIGLQETKVHD.DMFPLEEV.......AKLGYNVFYHGQK..
...GHYGVALLTK..ETPIAVRRGFPG.......DDEEAQRR.....IIMAEIPSLLGNVTVINGYFPQGESRDHPIKFP
AKAQFYQNLQNYLETELKR..DNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWG.LVDTFR
HANPQTADRFSWFDYRS.KGFDDNRGLRIDLLLASQPLAECC.VETGIDYEIRSMEKPSDHAPVWATFR
>GP|1944175|dbj|BAA19649.1/1-267
MKIMSFNINGLRARPHQL..........EEIINKYQPDVLGLQEIKVSD.EVFPYDLV.......DHLGYHVNHFGQK..
...GHYGVALLSK..QVPLSVRKGFPT.......DDEEAQKR.....IIMIDLETKFGQLTVINGYFPQGESREHPTKFP
AKQKFYADLQRYLEQDHNA..QNPVIIMGDMNISPSDLDIGIGEENRKRWLRTGKCSFLPEEREWYQRLYAYG.LEDTFR
HMNPTVNDKFSWFDYRS.KGFDDNRGLRIDHILANKALVAHC.VDTGIALDIRAMNKPSDHAPIWAEFK
>SP|P44318|EX3_HAEIN/1-267
MKFISFNINGLRARPHQL..........EAIIEKYQPDVIGLQEIKVAD.EAFPYEIT.......ENLGYHVFHHGQK..
...GHYGVALLTK..QEPKVIRRGFPT.......DNEDAQKR.....IIMADLETEFGLLTVINGYFPQGESRAHETKFP
AKEKFYADLQQYLEKEHDK..SNPILIMGDMNISPSDLDIGIGDENRKRWLRTGKCSFLPEERAWYQRLYDYG.LEDSFR
KLNPTANDKFSWFDYRS.KGFDDNRGLRIDHILVSQKLAERC.VDVGIALDIRAMEKPSDHAPIWAEFK
>GP|1388153|gb|AAB49625.1/1-267
MKFISFNINGLRARPHQL..........EAIINKHQPDVIGLQEIKVAD.EDFPHQLV.......EHLGYHVFYHGQK..
...GHYGVALLTK..KQPLTIRKGFPN.......DTADAQKR.....MIMAEINTDFGILTVLNGYFPQGENRQHETKFP
AKAKFYADLQHYLETALTA..YNPIIIMGDMNICSTDLDIGIGEANRKRWLREGKCSFLPEEREWLDRLYHYG.LVDTFR
AMHPTTTDQFSWFDYRS.KGFNDNRGLRIDLILASTTLANHC.VETGIDLEIRAMEKPSDHAPIWAVFK
>OMNI|MT0442/24-289
LRLATWNVNSIRTRLDRV..........LDWLGRADVDVLAMQETKCPD.GQFPALPL.......FELGYDVAHVGFD..
...QWNGVAIASR..VGLDDVRVGFDG.......QPSWSGKPEVAATTEARALGATCGGIRVWSLYVPNGRALDDP.HYT
YKLDWLAALRDTAEGWLRDDPAAPIALMGDWNIAPTDDDVWS......TEFFAGCTHVSEPERKAFNAIVDAQ.FTDVVR
PFTPGP.GVYTYWDYTQ.LRFPKKQGMRIDFILGSPALAARV.MDAQIVREERKGKAPSDHAPVLVDLH
>GP|3367747|gnl|PID|e1313498|AL/1-258
MRIATWNVNSITARLPRL..........LAWLESSGTDVLCLQEAKVAE.AQFPFDAL.......REAGYEAAVHATG..
...RWNGVAVLSR..VGLEDVVKGLPG.......DPGYEG......VQEPRAISATCGPVRVWSVYVPNGREVDHP.HYA
YKLQWFEALRAAVEGDAAG..GRPFAVLGDYNVAPTDDDVYD......RAAFEGATHVTPAERAALASLRGAG.LSDVVP
RPLKYD.HPFTYWDYRQ.LCFPKNRGMRIDLVYGNEPFAKAV.TDSYVDREERKGKGASDHAPVVVDLD
>SP|P21998|EXOA_STRPN/1-274
MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAENADIIAIQETKLSAKGPTKKHVEIL...EELFPGYENTWRSSQEP
ARKGYAGTMFLYKKELTPTISFPEIGAP......STMDLEGR.........IITLEFDAFFVTQVYTPNAG.DGLK.RLE
ERQ.VWDAKYAEYLAELDK..EKPVLATGDYNVAHNEIDLANPASN......RRSPGFTDEERAGFTNLLATG.FTDTFR
HVHGDVPERYTWWAQRSKTSKINNTGWRIDYWLTSNRIADKVTKSDMIDSGARQ.....DHTPIVLEID
>OMNI|NTL01SS02016/11-274
MDIASWNVNSVRSRQQHI..........LDWLGTNPVDVLCLQETKVVD.EDFPRQPF.......EEAGYHCHISGQK..
...SYNGVAIFSR..EPLQDVKIGFAALVEPALTGDLDEQKR.........VISGVYDGVRIVNLYVPNGSALDSE.KYL
YKL.RWLNLLQTYLEQLRRSDTPEFLVCGDFNIAPEDRDIHDPVGR......ENHIMATAMEREALTEVLAIANLQDAFR
KFTEETG.HYSWWDYRT.RGFSRNRGWRIDHHYLTPQLYDQA.QKCWIDREPRGWEKPSDHAPVVVTIN
>OMNI|AF0580/2-256
LKIATFNVNSIRSRLHIV..........IPWLKENKPDILCMQETKVEN.RKFPEADF.......HRIGYHVVFSGSK..
...GRNGVAIASL..EEPEDVSFGLDS.......EPKDED.R.........LIRAKIAGIDVINTYVPQGFKIDSE.KYQ
YKLQWLERLYHYLQKTVDF..RSFAVWCGDMNVAPEPIDVHSPD.K.....LKNHVCFHEDARRAYKKILELG.FVDVLR
KIHPNER.IYTFYDYRVKGAIERGLGWRVDAILATPPLAERC.VDCYADIKPRLAEKPSDHLPLVAVFD