HMM Seed Alignment: TIGR00643
Download Alignment>SP|P24230|RECG_ECOLI/28-665
INLHTVQDLLLHLPLRYEDRT..........HLYPIGELLPGV..YATVEGEVL............NC....NISFGGRR
MMTCQISD..GSGILTMRFFN..FSAAMKNSLAAGRRVLAYGEAKRGKY.........................GAEMIH
PEYRVQGDL...ST.PELQETLTPVYPTTEG.....VKQATLRKLTDQALDLLDTCA...IEELLPPELSQ..GMMTLPE
ALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSMLALRAG..............AQRFHAQPLSAND.TLKNKL
LA.ALPFKPTGAQARVVAEIERD.MALDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRN
WFAPL...........GIEVGWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRL
ALWEKGQQQ...................GFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRR.
..TDIIDRVHHACITEGRQAYWVCTLIEESELL.......EAQAAEATWEELKLAL.PELNVGLVHGRMKPAEKQAVMAS
FKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYK....TPLSKTAQIRLQVLR
DSNDGFVIAQKDLEIRGPGELLG...TRQTG.NAEFKVADLLR..DQAMIPEVQRLA
>SP|P43809|RECG_HAEIN/28-665
IGIHNLQDLLFHLPIRYEDRT..........RITLIANLRPEQ..YFTIEGIVQ............TC....EVAFGRRP
ILSVSLSD..GTSKIMLRFFN..FNAGMRNSFQVGVRVKAFGEVKRGRH.........................MPEIHH
PEYQIVRDN...AP.IVLEETLTPIYSTTEG.....LKQNSLRKLTDQALALLDKVQ...IAEILPNEFNP..HQYSLKE
ALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQKVRLG..............TQQFSALPLHYQT.DLKQRF
LA.TLPFQPTNAQKRVVSDIEQD.LIKDYPMMRLVQGDVGSGKTLVAALAALTAIDNGKQVALMAPTEILAEQHANNFRR
WFKPF...........GIEVGWLAGKVKGKSRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRL
MLREKGEKA...................GFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERR.
..AEIVMRVKNACVNEKRQAYWVCTLIDESEVL.......EAQAAEAIWEDLTKAL.PMLNIGLVHGRMKPQEKQDVMMR
FKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGCTASFCVLMYK....PPLGKVSQKRLQVLR
DSQDGFVISEKDLEIRGPGEVLG...TKQTG.IAELRVANLMR..DRKMIPTVQHYA
>SP|O34942|RECG_BACSU/26-648
LGIYDISDLLNYFPYRYDDY...........ELRDLEEVKHDE..RVTVEGKVH.....SEP...SLT....YYGKKRNR
.LTFRLLV..GHYLITAVCFN...RPYLKKKLSLGSVVTVSG..KWDKH.........................RQTISV
QELKNGPH....QE..DK..SIEPVYSVKEN.....VTVKMMRRFIQQALTQYADS....LPDPLPEKLRKSYKLPDYYQ
ALKAMH.QPETREA......LKLARRRFVYEEFLLFQLKMQAFRKA.............EREQTQGIRQRFSN.EELMRF
IK.SLPFPLTNAQSRVLREITAD.MSSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQHADSLVS
LFEKW...........DVSVALLTSSVKGKRRKELLERLAAGEIDILVGTHALIQDEVEFKALSLVITDEQHRFGVEQRK
KLRNKGQ.......................DPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKRIETYWVKHDML.
...DRILAFVEKELKQGRQAYIICPLIEESDKL.......DVQNAIDVYNMLSDIFRGKWNVGLMHGKLHSDEKDQVMRE
FSANHCQILVSTTVVEVGVNVPNATIMVIYDADRFGLSQLHQLRGRVGRGEHQSFCILMA.....DPKSETGKERMRIMS
ETNDGFELSEKDLELRGPGDFFG...KKQSG.MPEFKVADMVH..DYRALETARQDA
>OMNI|NTL02SP1538/24-642
LGIENLQDLLLYFPFRYEDF...........KTKQVLELEDGE..KAVLSGQVV.....TPA...SVQ....YYGFKRNR
.LRFSLKQ..GEVVFAVNFFN...QPYLADKIELGATLAVFG..KWDRA.........................KASLTG
MKVLAQVE........D...DLQPVYRLAQG.....ISQASLVKVIKTAFDQGLDLL...IEENLPQSLLDKYKLMSRCQ
AVRAMH.FPKDLAE......YKQALRRIKFAELFYFQMQLQTLKSE.............NRVQGSGLVLNWSQ.EKVTAV
KA.SLPFALTQAQEKSLQEILTD.MKSDHHMNRLLQGDVGSGKTVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQN
LFP.............NLKLALLTGSLKAAEKREVLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRR
ILREKGD.......................NPDVLMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQL.
...PQVLTWLEGEIQKGSQAYVISPLIEESEAL.......DLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQD
FKERKTDILVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLVA.....NPKTDSGKDRMRIMT
ETTNGFVLAEEDLKMRGSGEIFG...TRQSG.LPEFQVADIIE..DFPILEEARKVA
>SP|Q55681|RECG_SYNY3/155-797
LGLATVEDLLFYFPRDYLDYA..........QQVTIAELTAGE..TVTIVGRVVNCTCFTSPKNQNLN....ILQIQLRD
.QTGRIKL..SRFYAGKRFAHRGWQEKIKKLYPPQAVVAASGLVKSSKF.........................GLTLDN
PEIEVLDRHSPSIDSFKV.GRVLPVYPLTEG.....ITADFLRKLVLACQTAIAK.....LSDPLPQEIREKYELIDLQT
AIAQIH.FPENTEK......LSLARRRLVFDEFFYLQLGFLQRRYE.............QKQQQQSAIFTPHG.ELLEKF
SD.LLPFRLTQAQQRVVNEILQD.LNKPSPMNRLVQGDVGSGKTVVGVFAILAALQGGYQAALMAPTEVLAEQHYQKLVS
WFNLL...........YLPVELLTGSTKTAKRREIHAQLSTGQLPLLVGTHALIQETVNFQRLGLVVIDEQHRFGVQQRA
KLLAKGN.......................APHVLSMTATPIPRTLALTLHGDLEVSQIDELPPGRQPIHTSVITAKER.
...PQMYELIRREVAQGRQVYIIFPAIEESEKL.......DIKAAVEEHKYLTEKIFPNFNIGLLHGRLKSAEKEAALTA
FREKQTEIIVSTTVIEVGVDVPNATVMVIENAERFGLSQLHQLRGRVGRGSHQSYCLLVT.....NSKSNDARQRLGVME
QSQDGFFIAEMDLRLRGPGEFLG...TKQSG.LPDFALASLVE..DQEVLLLAREAA
>SP|O67837|RECG_AQUAE/114-758
LGIETVYDALFYFPEKYEDKR..........LNTSIKTAKVGE..KVALKVKVK...........EVK....IKENERYT
.LEVVCTDGTGYITLKYRYKN...PHFALKAFRKGMEIVVYGKLKSFKG.........................EKYMVH
PEVKSPSS.....E..EL.GKIIPVYYVRKRGELQEISSKTKQKRVRTALTALSESLYRYFPEYMPDYLIEKYNFPDIAL
CIKELH.NPKDISVNALNSFTDLYHKRVIYDELFLFQLALLLKKQE.............IKKE.KAPKVNVDE.KFLRKA
IE.KLPFKLTRAQERAIKEILED.LSRDVPMNRLLQGDVGSGKTIVAILTSLAVVKSGYQVAVMVPTEILAHQHYKKFSE
MLKDY...........GVNVALLTGSLTPSQKKSVYKHVKEGNIHVLVGTHALIQDKVEFKNLGYVIIDEQHRFGVMQRK
LLLEKGKGL.....................YPHCLVMSATPIPRTLALSIYGDLDISIIDELPPGRKEVITKLYFESQK.
...EEVYKKVEEELKKGNKVYVIYPLIEESEKL.......NLKAATEEYERWKKLF.PDRKVLLLHGKMPDKEKLAVMEE
FK.REGDILVSTTVIEVGIDVPEATVMVIEDAHRFGLSQLHQLRGRVGRSDKEAYCLLVVPDEIKNEKNES.LKRLRVFV
KTTDGFKIAEEDLKLRGPGEIIG...VSQSG.YFGFRVANLARSQDRALLGVARKDA
>SP|P96130|RECG_TREPA/27-672
LNISTIGDILSYWPRLWEDRT..........QEQMFSQWTLAH..RLQVRVSVT...........AHC....WFGFGKSK
TLKLVVQDG.QGCVAELLCFR...RNFLHFMFPVGSEAVVYGSFYEKD...........................GLLES
SSFDIEKI.....DCIE..KKILPVYPLTKG.....LKQMKLRMLICAAMDQWIGT....VDSELPKPILEKYHLLTKRD
VLLSMH.TPRTLDD......VAKGKHSLIFEEFFSLQMTIGMRSLQKR...GRLPLTQGESDQQSAIPSVVSELSLLQKK
LHRCLPFELTVDQKRVITEITQD.LEREEPMARLIQGDVGSGKTLVAFFSCLKIIEQGGQVALLAPTELLARQHADTAAR
LLAPI...........GIRLAFLTGNVKSEGRAYLLEALVAGEINLVVGTHALFSKSVRYHDLRLVIIDEQHRFGVLQRS
ALIQKGREGNPQ................GKTPHIIMMSATPIPRTLALSVFGDLDISIIKSMPGGRKPVITYIARKTKA.
...EKVYEFVGNEIEKGRQAYFIYPRIHDIGLT.......DLKSVQCMYMYLKNYF.ARYAVAMIHSKMTEEEQQRIMKY
FSEGTVHILVATSVVEVGVDVPNANCIVIEHAERFGLSALHQLRGRVGRGDVQSYCFLMHG....DEMTECAKRRLKIMG
STADGFVIAEEDLKLRGPGDVGDTKNFEQSG.YSGFRVADPVR..DYPILQVAREAA
>SP|O51528|RECG_BORBU/27-654
LQIFNVKDLIEFFPVKYEDRQ..........NIQTFPDFSKVKSCDMMTVFTVL...........GHK....KFGDSSKK
NLKLTVKSI.NEEPFEILLFN...RAFLENVFKIDKKFYIYSKFTYNDY.........................SGLWSC
SNFDSEVYS....DKPERFKKILPVYSLTEG.....LTSKKISLYVKEALEYFFKF....GQTDIPRFLIEKYSLLSLSD
ALKEIH.FPSSLEM......LEKAKKTLIYREIFLLQFFSRYRSSK........ILFR.EKKD.......LSK.DLLEKV
VS.SLPFELTEDQKISIDEIFFD.LNSSKPMNRLLQGDVGSGKTLVALLSGLPLIEAGYQVAFMAPTDLLARQHYDNLSN
ILAPF...........NISMTLLTGSLRKKDKEQALESIRNGTSGLIVGTHAIFYESTEFKRLAYVIIDEQHKFGVVQRE
ELKNKG.EG......................VDMLLMSATPIPRSFALTLFGDLEVSFIKTLPKGRLPITTYLARHGNE.
...DKVYEFLRKELLKGHQVYFVYPLISSSEKF.......ELKDVNNMCLKLKEVF.GEYVVDMLHSKLPSDLKEEIMKN
FYSKKVDILVATSVIEVGIDCPNATCMVVEHAERFGLSTLHQIRGRVGRSNLQSFFFLLYK....EPLTSAGKFRLKTIK
ENLDGFKIAEEDLRLRGPGNLFG...LEQAG.YLKLKIANFVD..DREIIVLVREEL
>SP|P95122|RECG_MYCTU/24-706
FGMRTVDDLLRHYPRSYVEGA..........ARVGIGDARPEAGEHITIVDVIT.......D...TYS....FPMKKKPN
RKCLRITVGGGRNKVTATFFN...ADYIMRDLTKHTKVMLSGEVGYYKGAMQLTHPAFLILDSPDGKNHGTRSLKSIADA
SKAISGELV...VEEFER..RFFPIYPASTK.....VQSWDIFKCVRQVLDVLDR.....VDDPLPAELRAKHGLIPEDE
ALRAIH.LAESQSL......RERARERLTFDEAVGLQWALVARRHG.............ELSE.SGPSAAWKSNGLAAEL
LR.RLPFELTAGQ.REVLDVLSDGLAANRPLNRLLQGEVGSGKTIVAVLAMLQMVDAGYQCALLAPTEVLAAQHLRSIRD
VLGPLAMGGQLGGAENATRVALLTGSMTAGQKKQVRAEIASGQVGIVIGTHALLQEAVDFHNLGMVVVDEQHRFGVEQRD
QLRAKAPAG....................ITPHLLVMTATPIPRTVALTVYGDLETSTLRELPLGRQPIATNVIFVKDKP
AWLDRAWRRIIEEAAAGRQAYVVAPRIDESDDTDVQGGVRPSATAEGLFSRLRSAELAELRLALMHGRLSADDKDAAMAA
FRAGEVDVLVCTTVIEVGVDVPNATVMLVMDADRFGISQLHQLRGRIGRGEHPSVCLLAS....WVPPDTPAGQRLRAVA
GTMDGFALADLDLKERKEGDVLG...RNQSGKAITLRLLSLAE..HEEYIVAARDFC
>SP|O26051|RECG_HELPY/12-610
NVKSLLEALLVYTPKGYKDLN..........LLERFETGLSGV.......LEVG............I.....LEKRNYAK
VLKIFAYSKRFYKNLELVFFN..YSAFHHSQFKTGESLFIYGKLEQSSFN........................QAYIIN
TPKIITKFG...........KISLIFKKVKN...........HKKIQENLQKLIS.....LENLKKEGVKENIAHLLLEI
FFPTPHFVKDFETN......KNFPSQHLNALKYIEMLFYMKNLERK..............KLQFGAKIACPNNNERLKAF
IA.SLPFKLTRDQQNAIKEIQND.LTSSIACKRLIIGDVGCGKTMVILASMVLTYPN..KTLLMAPTSILAKQLYNEALK
FLPPY............FEVELLLGGSYKKRSNHLFETIT....HVVIGTQALLFDKRDLNEFALVITDEQHRFGTKQRY
QLEKMASSK...................GNKPHSLQFSATPIPRTLALAKSAFVKTTMIREIPYPKEIETLVLHKRDFK.
....IVMEKISEEIAKNHQVIVVYPLVNESEKIP............YLSLSEGASFWQKRFKKVYTTSGQDKNKEEVIEE
FR.ESGSILLATTLIEVGISLPRLSVMVILAPERLGLATLHQLRGRVSRNGLKGYCFLCT........IQEENERLEKFA
DELDGFKIAELDLEYRKSGDLLQ..GGEQSG..NSFEYIDLAK..DENIIAEVKRDF
>GP|3785974|AC005560/154-834
CGFHTMKKLLHHFPRTYADLQNAQVDIEDGQYLIFVGKVLSSKGVRASSSFSFLEVIVSCEVSGRDRTPEDLSHNAEDKA
GKSIFLHLKKFFRGTRFTWQP..FLNSIQEKHKVGDLVCISGKVKSLRAEDHFEMR...............EYNIDVLKD
EEESSHRAQ..........GRPYPIYPSKGG.....LNPKFLSDVISRALRVLPAN.....MDPIPKEITKVFGLPSLND
AYVGIH.EPKTLDE......ADLARKRLIFDEFFYLQLARLYQMLQSLGTKIEKDVLLEKFRKPVLNSVYIEEWSTLTKS
FLKALPYSLTPSQLSAVSEIIWD.LKRPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMAPTELLAIQHYEQCRD
LLEN..............................MEGDLQSGAISFIIGTHSLIAEKIEYSALRIAVVDEQQRFGVIQRG
KFNSKLYGTSMISKSGSSDSDDTSKADLSMAPHVLAMSATPIPRSLALALYGDISLTQITGMPLGRIPVETHIFEGNETG
..IKEVYSMMLEDLKSGGRVYVVYPVIDQSEQLP......QLRAASAELEIVTKKF.PKYNCGLLHGRMKSDDKEEALNK
FRSGETQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGTRKSKCLLVG.......SSTNSLKRLNMLG
KSSDGFYLANIDLLLRGPGDLLG...KKQSGHLPEFPVARLEI..DGNMLQEAHIAA