HMM Seed Alignment: TIGR00801

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>SP|O32140|PUCK_BACSU/4-412
QHNAL.....QLMMLGLQH........ML......AMYAGAILVPLIVGAAI...GLNAGQLTYLIAIDLFMCGAATLLQ
LWRNRYFG......IGLPVVLGCTFTAVG.....PMISIGST..........YGVPAIYGAIIAAGLIVVLAAGFFGKLV
R.....FFPPVVTGSVVMIIGISLIPTAMNNLAGGE...GSK................EFGSLDNVLLGFGVTAFILLLF
YFFKGFIRSIAILLGLIAGTAAAYFMG.......KVDFSE.VLEASWLHVPSLFYFG...PPTFELPAVVTMLLVAIVSL
VESTGVYFALADITNRRLS....EKDLEKGYRAEGLAILLGGLFNAFPYTAFSQNVGIVQLSKMKSVNVIAITGIILVAI
GLVPKAAALTTVIPTPVLGGAMIVMFGMVISYGIKMLSSVDLDS.QGNLLIIASSVSLGLGATTVPALFSSLS.......
...........GAASVLAGSGIVIGSLTAI
>SP|P42086|PBUX_BACSU/4-410
GFG.......KTLSLGIQH........VL......AMYAGAIVVPLIVGKAM...GLTVEQLTYLVSIDIFMCGVATLLQ
VWSNRFFG......IGLPVVLGCTFTAVS.....PMIAIGSE..........YGVSTVYGSIIASGILVILISFFFGKLV
S.....FFPPVVTGSVVTIIGITLMPVAMNNMAGGE...GSA................DFGDLSNLALAFTVLSIIVLLY
RFTKGFIKSVSILIGILIGTFIAYFMG.......KVQFDN.VSDAAVVQMIQPFYFG...APSFHAAPIITMSIVAIVSL
VESTGVYFALGDLTNRRLT....EIDLSKGYRAEGLAVLLGGIFNAFPYTAFSQNVGLVQLTGIKKNAVIVVTGVILMAF
GLFPKIAAFTTIIPSAVLGGAMVAMFGMVIAYGIKMLSRIDFAK.QENLLIVACSVGLGLGVTVVPDIFKQLP.......
...........SALTLLTTNGIVAGSFTAV
>SP|O32139|PUCJ_BACSU/4-415
RSF.......KVFTLSLQH........VL......AMYAGAILVPLLVGRAL...NVTTEQLSYLLAIDLLTCGVATLLQ
TLRGTYIG......IGLPVMLGSSFVAVT.....PMIAIGSN..........YGIHAIYGSIIAAGVFIFLFARFFGKLT
V.....LFPPVVTGTVVTLIGLSLVPTGVKNMAGGEKINGSAN..............PEYGSLENLLLSVGVLVLILVLN
RFLKGFARTLSVLIGIAAGTAAAAIMG.......KVSFSS.VTEAPFFQIPKPFYFG...APAFEIGPILTMLIVGIVII
VESTGVFYAIGKICGRPLT....DKDLVKGYRAEGIAILIGGLFNAFPYNTFAQNAGLLQLTKVKTRNIVVTAGCILVCL
GLIPKIAALASAVPAAVLGGATVVMFGMVIASGVKMLSTADLKN.QYHLLTIACSIALGIGASTAPGIFAEFP.......
...........APIRILVSDGTITGSLTAI
>OMNI|NTL01EC02824/46-464
RILSP....GKLIILGLQH........VL......VMYAGAVAVPLMIGDRLG...LSKEAIAMLISSDLFCCGIVTLLQ
CIGIGRFMG.....IRLPVIMSVTFAAVT.....PMIAIGMN........PDIGLLGIFGATIAAGFITTLLAPLIGRLM
P.....LFPPLVTGVVITSIGLSIIQVGIDWAAGGKGNP...................QYGNPVYLGISFAVLIFILLIT
RYAKGFMSNVAVLLGIVFGFLLSWMMN.......EVNLSG.LHDASWFAIVTPMSFG...MPIFDPVSILTMTAVLIIVF
IESMGMFLALGEIVGRKLS....SHDIIRGLRVDGVGTMIGGTFNSFPHTSFSQNVGLVSVTRVHSRWVCISSGIILILF
GMVPKMAVLVASIPQFVLGGAGLVMFGMVLATGIRILSRCNYTTNRYNLYIVAISLGVGMTPTLSHDFFSKLP.......
......AVLQPLLHSGIMLATLSAVVLNVF
>SP|P50487|YCPX_CLOPE/1-290
................................................................................
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...........ARVPVVALIGLTLLPVSIDWAAGGAGSAN...................YASLENLAVAMFVLIITLLLN
NYGKGMISSASILIGIVVGYIVCIPLG.......LVDFTS.VKEASWLSFPKILEFG....VTFDAKAVMAFIPAYFVAT
IGTVGMLKSYWRDILLLIFG...DKRVAAGVLSDGVGSALGGLVGSCPNTSFSQNIGIISLTKVASRHVAVMAGILLVIL
GFLPKVAAIITGIPNPVLGGVGIMMFGTVAAAGIRTLSNIKLT..ERNLLIIAISMGLGLGVTFRPDVIHNLP.......
......EAIRMIFSSGISTGTIAALILNAV
>SP|P27432|YICE_ECOLI/29-457
RPPLP.....QTLFAACQH........LL......AMFVAVITPALLICQA..LG.LPAQDTQHIISMSLFASGVASIIQ
IKAWGP......VGSGLLSIQGTSFNFVAPLIMGGTALKTGG..........ADVPTMMAALFGTLMLASCTEMVISRVL
H.LARRIITPLVSGVVVMIIGLSLIQVGLTSIGGGYAAMSDN................TFGAPKNLLLAGVVLALIILLN
RQRNPYLRVASLVIAMAAGYALAWFMG.......MLPESNEPMTQELIMVPTPLYYG....LGIEWSLLLPLMLVFMITS
LETIGDITATSDVSEQPVSGPLYMKRLKGGVLANGLNSFVSAVFNTFPNSCFGQNNGVIQLTGVASRYVGFVVALMLIVL
GLFPAVSGFVQHIPEPVLGGATLVMFGTIAASGVRIVSREPLN..RRAILIIALSLAVGLGVSQQPLIL.QFAPEW....
........LKNLLSSGIAAGGITAIVLNLI
>SP|Q46815|YGFO_ECOLI/37-464
RPPFH.....QALVGAITH........LL......AIFVPMVTPALIVGAA..LQ.LSAETTAYLVSMAMIASGIGTWLQ
VNRYGI......VGSGLLSIQSVNFSFVTVMIALGSSMKSDG..........FHEELIMSSLLGVSFVGAFLVVGSSFIL
P.YLRRVITPTVSGIVVLMIGLSLIKVGIIDFGGGFAAKSSG................TFGNYEHLGVGLLVLIVVIGFN
CCRSPLLRMGGIAIGLCVGYIASLCLG.......MVDFSS.MRNLPLITIPHPFKYG....FSFSFHQFLVVGTIYLLSV
LEAVGDITATAMVSRRPIQGEEYQSRLKGGVLADGLVSVIASAVGSLPLTTFAQNNGVIQMTGVASRYVGRTIAVMLVIL
GLFPMIGGFFTTIPSAVLGGAMTLMFSMIAIAGIRIIITNGLK..RRETLIVATSLGLGLGVSYDPEIF.KILPAS....
........IYVLVENPICAGGLTAILLNII
>SP|P48777|UAPC_EMENI/47-541
RLPFVKQKRRAAPFFGLEDKIPLVLALLLGLQHALAMLAGVITPPILLAGSSGAN.FGADESQYLVSTSLIVSGLLSAVQ
MFRLHVYKTRYYVGTGLVSVVGTSFGTITVATGTFNQMYSTGYCPVDGSGNRLPCPKGYGALLATSCLCSLLEIGLSFMS
SRLLKALFPPIVTGPTVFLIGASLIGNAMKDWAGGSGTCSSNPGNGALCPSADAPHPLPWGSAEFIGLGFLVFATIILCE
RFGSPIMKSCAVIVGLLVGCIVAAACG.......YFDRSG.IDAAPVASFIWVKTFP....LTIYAPLILPLLAVYMVIM
MESIGDITATCDVSRLQVEGATFDSRIQGGVLGNGITCLLAGLCTITPMSVFAQNNGVIALTPCANRKAGYCCCFFLVVM
GIFAKFAAALVAIPSSVLGGMTTFLFSSVAISGVRIMCSVDWT..RRNRFILTASFAVGMAATLVPDWFSYFFTYSGDNH
ALEGLLQAVELVMANGFAVTGFLGLLLNLI
>PIR|A48878|A48878/94-562
RFPCC...WRLSWVFSMR.........LP.......CWAGVVTPPLIISSS..LS.LPSDLQQYLVSTSLIVCGLLSMVQ
ITRFHIYKTPYYIGSGVLSVMGVSFSIISVASGPFNQMYSNGFCQLDEAGNRLPCPEAYAALVGTSACCALVEILLAFVP
PKVIQKIFPPIVTGPTVMLIGISLIGTGFKDWAGGS.ACMDD...GMLCPSATAPRPLPWGSPEFIGLGFLVFVSIILCE
RFGAPVMKSCSVVIGLLVGCIVAAACG.......YFSHAD.IDAAPAASFIWVKTFP....LSVYGPMVLPIIAVFIICA
CECIGDVTATCDVSRLEVRGGTFESRIQGAVLADGTNSVVAALATMTPMTTFAQNNGVIALTPCANRWAGYCCCLILIVA
GIFAKFAAAIVAIPNSVMGGMKTFLFASVVISGQAIVAKAPFT..RRNRFILTASMALGYGATLVPTWFGNVFPQT.ENR
DLEGFENAIELVLETGFAVTAFVAMLLNAI
>SP|P41006|PYRP_BACCL/11-411
RPTVG.....QWITLSLQH........LF......AMFGATILVPYLVGLDP..............SIALLTSGLGTLAF
LLITKWQ.........VPAYLGSSFAYIA.....PIIAAKTA..........GGPGAAMIGSFLAGLVYGVVALIIKKAG
YRWVMKLLPPVVVGPVIIVIGLGLAGTAVGMAMNGPDGK.....................YSLLHFSVALVTLAATIVCS
VLARGMLSLIPVLVGIVVGYLYALAVG.......LVDLSK.VAAAKWFEWPDFLIPFADYPVRVTWEIVMLMVPVAIVTL
SEHIGHQLVLSKVVGRDLIQ...KPGLHRSILGDGTATMISALLGGPPKTTYGENIGVLAITRVYSVYVLAGAAVIAIAF
GFVGKITALISSIPTPVMGGVSILLFGIIASSGLRMLIDSRVDF.GQTRNLVIASVILVIGIGGAVLKISDS........
...........FQITGMALSAIVGVLLNLI
>SP|P39766|PYRP_BACSU/13-417
VPTPF.....SWVSFSLQH........LF......AMFGSTILVPKLVGMSP..............AVALVTSGIGTLAY
LLITKGQ.........IPAYLGSSFAFIS.....PIILVKAT..........GGPGAAMVGAFLAGLVYGLIALLIRQLG
TGWLMKILPPVVVGPVIIVIGLGLASTAVNMAMYADPNASEL.................VYSLKHFSVAGVTLAITIICA
IFLRGFLSLIPVLIGIIGGYLFALTQG.......IVNFQP.VLDAKWFAVPEFIIPFKDYHRQLRSASQPQWFLSHLSQC
QSISATNGAESKVVGQDFI....KAGLHRSIMGDSVATILASLIGGPPTTTYGENIGVLAITRVFSVFVIGGAAVIALCF
GFIGKISALISSVPSAVMGGVSFLLFGIIASSGLRMLIDNKIDY.ENNRNLIITSVILVIGVGGAFIQVSQGG.......
...........FQVSGMALAAIVGVILNLI
>gi|2895752|gb|AAC12928/11-409
RPQAF.....HWVGLSLQH........LF......TMFGATVLVPILVGIDP..............GIALVSSGLGTMVY
LITTKGK.........IPAYLGSSFAFIA.....AMQMLMKS..........DGYPAIAQGAMTTGLVYLIVSLIIKKIG
SDWLDKILPPIVVGPVVMVIGLGLAANAANNAMYNNNVY.....................D.FKYIAVALITLGLTIFYN
MFFKGFLGLIPILLGIVSGYLVALTFG.......IIDLTP.IKEAAWFALPNFEVPFVQYEPKLYLNAITTMAPIAFVTM
TEHIGHLMVLNKLTKRNFFQ...DPGLSKTLMGHGLSQIVPRFVGGPPVTSYGENIGVLAITRVHSVFVIGGPAVFAVAL
GFVGKLHALILSIPGPVISGISFVLFGVIAASGLKILIDNKINF.DKKKNLLIASVILVIGIGGLVFKVGTF........
............ELSSMALATVLGIVLNLI
>SP|P33780|URAA_ECOLI/11-405
RPPLL.....QTIPLSLQH........LF......AMFGATVLVPVLFHINP..............ATVLLFNGIGTLLY
LFICKGK.........IPAYLGSSFAFIS.....PVLLLLP...........LGYEVALGGFIMCGVLFCLVSFIVKKAG
TGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEG..Q.................TPDSKTIIISITTLAVTVLGS
VLFRGFLAIIPILIGVLVGYALSFAMG.......IVDTTP.IINAHWFALPTLYTP......RFEWFAILTILPAALVVI
AEHVGHLVVTANIVKKDLLR...DPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILL
SCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVLIESKVDY.NKAQNLILTSVILIIGVSGAKVNIGAA........
............ELKGMALATIVGIGLSLI
>OMNI|NTL01EC00980/48-446
RLPFA.....QTAVMGVQH........AV......AMFGATVLMPILMGLDP..............NLSILMSGIGTLLF
FFITGGR.........VPSYLGSSAAFVG.....VVIAATGFN....GQGINPNISIALGGIIACGLVYTVIGLVVMKIG
TRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASA...........................FDSWMAVMTVLCIGLVA
VFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTL.VSHAAWFGLPHFSTP......AFNGQAMMLIAPVAVILV
AENLGHLKAVAGMTGRNMD.....PYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLL
GFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNRVDL.SQNGNLIMVAVTLVLGAGDFALTLGGFT.......
............LG.GIGTATFGAILLNAL
>SP|P45117|URAA_HAEIN/12-405
NQSKL.....KQSFVGLQM........LF......VAFGALVLVPLITGLDS..............NTALLTAGVGTLLF
QFCTGKQ.........VPIFLASSFAFIA.....PIQYGVQT..........WGIATTMGGLAFTGLVYFALSTLVKLRG
AEALQRFFPPVVVGPVIIIIGMGLAPIAVDMSLGKNSA.....................YAYNDAVLVSMVTLLTTLSVA
VFAKGLMKLIPIMFGITAGYILCLFLG.......LINFQP.VIDAPWFSLPKLTTP......EFNLEAILYMLPIAIAPA
VEHVGGIMAISSVTGKDFLK...KPGLHRTLLGDGIATAAASLVGGPPNTTYAEVTGAVMLTRNFNPNIMTWAAVWAIAI
SFCGKVGAFLSTIPTIVMGGIMMLVFGSIAVVGMSTLIRGKVDV.TEARNLCIISVVMTFGIGNMFVDVGNVS.......
............LK.GISLCAIVAIILNLV