HMM Seed Alignment: TIGR00915

Download Alignment

>SP|P24181|ACRF_ECOLI/1-1034
.MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDTVTQVIEQNMNGIDNLMYMS
STSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVA
SNVKDTLSRLNGVGDVQLFGA.QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQT
RFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFP
QGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGM
VLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM
ALSVLVALILTPALCATLLKPVS.AEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLR
LPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERN
GDENSAEAVIHRAKMELG.KIRDGFVIPFNMPAIVELGTATGFDFELID.QAGLGHDALTQARNQLLGMAAQHPAS.LVS
VRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSAN
GEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMALMENLA.SKLPAGIGYDWTGMSYQERLSGNQAP
ALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLF...........NQKNDVYFMVGLLTTIGLSAKNAI
LIVEFAKDLMEKEGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVP
VFFVVIR....RCFKG.........................
>SP|P31224|ACRB_ECOLI/1-1049
.MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMS
SNSDSTGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVA
ANMKDAISRTSGVGDVQLFGS.QYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQQLNASIIAQT
RLTSTEEFGKILLKVNQDGSRVLLRDVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFP
SGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGM
VLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAM
ALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVR
LPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRP
GEENKVEAITMRATRAFS.QIKDAMVFAFNLPAIVELGTATGFDFELID.QAGLGHEKLTQARNQLLAEAAKHPDM.LTS
VRPNGLEDTPQFKIDIDQEKAQALGVSINDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYRMLPDDIGDWYVRAAD
GQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLA.SKLPTGVGYDWTGMSYQERLSGNQAP
SLYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALLAATFR...........GLTNDVYFQVGLLTTIGLSAKNAI
LIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIFFVP
VFFVVVR....RRFSRKNEDIEHSHTVDHH...........
>GP|438854|gb|AAA74437.1/1-1046
.MSKFFIDRPIFAWVIALVIMLAGGLSILSLPVNQYPAIAPPAIAVQVSYPGASAETVQDTVVQVIEQQMNGIDNLRYIS
SESNSDGSMTTTVTFEQGTDPDIAQVQVQNKLQLATPLLPQEVQRQGIRVTKAVKNFLMVVGVVSTDGSMTKEDLSNYIV
SNIQDPLSRTKGVGDFQVFGS.QYSMRIWLDPAKLNSYQLTPGDVSSAIQAQNVQISSGQLGGLPAVKGQQLNATIIGKT
RLQTAEQFENILLKVNPDGSQVRLKDVADVGLGGQDYSINAQFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFMP
QGMKVVYPYDTTPVVSASIHEVVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFSINTLTMFGM
VLAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGALVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAM
ALSVIVALILTPALCATMLKPIEKGDHGEHKGGFFGWFNRMFLSTTHGYERGVASILKHRAPYLLIYVVIVAGMIWMFTR
IPTAFLPDEDQGVLFAQVQTPPGSSAERTQVVVDSMREYLLEKESSSVSSVFTVTGFNFAGRGQSSGMAFIMLKPWEERP
GGENSVFELAKRAQMHFF.SFKDAMVFAFAPPSVLELGNATGFDLFLQD.QAGVGHEVLLQARNKFLMLAAQNPA..LQR
VRPNGMSDEPQYKLEIDDEKASALGVSLADINSTVSIAWGSSYVNDFIDRGRVKRVYLQGRPDARMNPDDLSKWYVRNDK
GEMVPFNAFATGKWEYGSPKLERYNGVPAMEILGEPAPGLSSGDAMAAVEEIV.KQLPKGVGYSWTGLSYEERLSGSQAP
ALYALSLLVVFLCLAALYESWSIPFSVMLVVPLGVIGALLATSMR...........GLSNDVFFQVGLLTTIGLSAKNAI
LIVEFAKELHE.QGKGIVEAAIEACRMRLRPIVMTSLAFILGVVPLAISTGAGSGSQHAIGTGVIGGMVTATVLAIFWVP
LFYVAVS....TLFKDEASKQQASVEK.....GQ.......
>GP|3319233|gb|AAC38671.1|/1-1050
.MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIAVTYPGASAQTVQDTVVQVIEQQLNGIDNLRYVS
SESNSDGSMTITATFEQGTNPDTAQVQVQNKLNLATPLLPQEVQQQGIRVTKAVKNFLLVIGLVSEDGSMTKDDLANYIV
SNMQDPISRTAGVGDFQVFGA.QYAMRIWLDPAKLNKFQLTPVDVKTAVAAQNVQVSSGQLGGLPALPGTQLNATIIGKT
RLQTAEQFESILLKVNKDGSQVRLGDVAQVGLGGENYAVSAQFNGKPASGLAVKLATGANALDTAKALRETIKGLEPFFP
PGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAM
VLAIGLLVDDAIVVVENVERVMSEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAM
GLSVLVALIFTPALCATMLKPLKKGEHHTAKGGFFGWFNRNFDRSVNGYERSVGTILRNKVPFLLAYALIVVGMIWLFAR
IPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVVDQMREYLLKDEADTVSSVFTVNGFNFAGRGQSSGMAFIMLKPWDERS
K.ENSVFALAQRAQQHFF.TFRDAMVFAFAPPAVLELGNATGFDVFLQD.RGGVGHAKLMEARNQFLAKAAQSKI..LSA
VRPNGLNDEPQYQLTIDDERASALGVTIADINNTLSIALGASYVNDFIDRGRVKKVYIQGEPSARMSPEDLQKWYVRNGA
GEMVPFSSFAKGEWTYGSPKLSRYNGVEAMEILGAPAPGYSTGEAMAEVERIA.GELPSGIGFSWTGMSYEEKLSGSQMP
ALFALSVLFVFLCLAALYESWSIPIAVVLVVPLGIIGALIATSLR...........GLSNDVYFLVGLLTTIGLAAKNAI
LIVEFAKELHE.QGRSLYDAAIEACRMRLRPIIMTSLAFILGVVPLTIASGAGAGSQHAIGTGVIGGMISATVLAIFWVP
LFFVAVS....SLFGSKEPEKDVTPENPRYEAGQ.......
>SP|P24177|ACRD_ECOLI/1-1037
.MANFFIDRPIFAWVLAILLCLTGTLAIFSLPVEQYPDLAPPNVRVTANYPGASAQTLENTVTQVIEQNMTGLDNLMYMS
SQSSGTGQASVTLSFKAGTDPDEAVQQVQNQLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVA
SNIQDPLSRVNGVGDIDAYGS.QYSMRIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQALNATINAQS
LLQTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFP
HGLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTMFAM
VLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAM
VLSVLVAMILTPALCATLLKPLKKGEHHGQK.GFFAWFNQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLR
LPTSFLPLEDRGMFTTSVQLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSERD
SKTGTSFAIIERATKAFN.QIKEARVIASSPPAISGLGSSAGFDMELQD.HAGAGHDALMAARNQLLALAAENPE..LTR
VRHNGLDDSPQLQIDIDQRKAQALGVAIDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQAAAPYRMLPDDINLWYVRNKD
GGMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGVSTGTAMDIMESLV.KQLPNGFGLEWTAMSYQERLSGAQAP
ALYAISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMR...........GLENDVYFQVGLLTVIGLSAKNAI
LIVEFANEMNQK.GHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGAGSGGQHAVGTGVMGGMISATILAIYFVP
LFFVLVR....RRFPLKPRPE....................
>GP|2605914|gb|AAD12176.1|/1-1049
.MSRFFIDRPIFAWVLAIVAMLAGALSLAKMPISQYPNIAAPAVSIQVSYPGASAQTVQDTVVQVIEQQLSGLDGFRYMS
AESASDGSMTIIVTFEQGTDPDIAQVQVQNKLQLATPRLPEEVQRQGLRVVKYQMNFFLVMSLVDRSGKLDNFDLGNLIA
SQLQDPISRIPGVGDFQLFGS.PYAMRIWLDPGKLNSYQLTPTDVASAIREQNVQVSSGQLGGLPTRSGVQLNATVLGKT
RMTTPSQFDEILVKVNPDGSQVRVKDVGRAELGADSFAISAQYKDSPTASLALRLSTGGNLLETVDAVKKLMEQQKAYLP
DGVEVIYPYDTTPVVEASIESVVHTIFEAVVLVFLVMYLFLQSFRATLIPTLAVPVVLLATFALLPYFGLNINVLTMYAM
VLAIGLLVDDAIVVVENVERLMHDEGLSPLEATRKSMDQISGALVGIGMVLSAVFVPMAFFGGSAGIIYQQFAITIVVCM
GLSILVALVFTPALCVTILKAPEGNSHHERKG.FFGWFNRIFDRGTRRFERGVGAMLKGRGRYLLAFLLITGGTGYLFTQ
IPKAFLPNEDQGLMMIEVRTPANASAERTEGVLQEVRDYLANDEGALVEHFMTVNGFNFAGRGQNSGLVLITFKDWKERH
GAGQDVFSIAQRANQHFA.KIKDASVMAFVPPAILEMGNAMGFNLYLQD.NLGLGHEALMAARNQFLQLASQNPK..LQA
VRPNGKDDEPQFQVNIDDEKARALQVSIASINETMSAAWGSMYVNDFIDRGRVKRVYVQGEDISRISPEDFDKWYVRNSL
GQMVPFSAFATGEWVNGSPKLERYGGISSLNILGEPAPGYSTGDAMIAIAEIM.QQLPAGIGLSYTGLSYEEIQTGDQAP
LLYALTVLIVFLCLAALYESWSVPVSVIMVVPLGILGAVLATLWR...........DLTADVYFQVGLMTTVGLSAKNAI
LIVEFAKELYEKEGYPIVKAAIEAAKLRLRPILMTSLAFTFGVLPMAIASGAGAGSQHSIATGVVGGMITATVLAVFFVP
LFYVVVV....KLFEGLMKRKPNAVKEVTHEV.........
>GP|3004984|gb|AAC25691.1|/1-1046
.MARFFIDRPIFAWVIAIIIMGLGVLSIMRLPISQYPSIAGPSVVIGATYPGASAETVADTVVQIIEKEMTGLDGLRYID
SSTTSTGRATVTLTFNLGTDPDIAQVQVQNKLSQAEASLPSEVTRQGVTVEKSTTGFLMVIALISDDGARSAIDLADYLN
SYMVEPVSRLKGVGKVEVFGS.EYAMRIWLDPQKLKYYGLSPTTVIHAISAQNAQISAGSFGAMPAPEGQQLNATVTAQS
LLKTPQDFERIVLRADTDGGLVLLRDVARAELGTENYEISSFYNGKPSSGVAIQLASGANALETAELVKAKMADLGAFLP
AGVSYVIPYDTTPFVSLSIEAVIHTLIEAIVLVVFVMLIFLHNFRATLIPTLAVPVVLLGTFGIMAALGFSINTLTMLAM
VLAIGLLVDDAIVVVENVERIMRDEHLDPVAATKNRWEKSRARSWASPWWFPPSSCRWRFSAVQQGEMYKQFSVTIVAAM
ALSVLVALIFTPALCATMLKAHDHNAKSGLASRFSNWFERNFSWLTTRYGNVVRASAKRPLRMFLVYLLLVGAMVFLYQK
TPTSFLPDEDQGTLMTIIQTPPGSTAQNTEAVLGKVENYYMNAEAQNVESVFSVSWFLLAGQGQNMGMMFVKLKDWEERK
GKENSAQAIAARAFGPLMGGIKEAIVVPLVPPAVTELGNSNGFTAFLQA.RSGQSHEQLLEARNMLLGLAAQSPK..LMA
VRPNGVEDASQFELNIDWGKAGAVGLSAADVGSFLTTVWSSSYVNDFLYEGRMKRVYVQGEPLARTGPEDLALWRVPNAN
GDFVDLSTIASQNWVFGPQQVIRYDALPAMSIEGSAAPGFSSGEALAEIEALA.AKLPPGFSLQWTGMSLEEKDAGAGAL
PLYGLALATMFLCLAALYESWTIPVAVLLAMPVGILGALLGAWIG...........GQSNGVYFQVGLLTVVGLTGKNGI
MIVEFARERMAQLGESAFEAVCQAAKLRFRPILMTSLAFGLGVIPLVISTGAGAGARQAIGYATFFGTVTGTLLAIVFVP
VFFVLIS....GIFSRRSVKAAEPKTA..............
>GP|1408202|gb|AAC45560.1/1-1067
.MAKFFIDRPIFAWVISIFIIAAGIFGIKSLPVSQYPSVAAPTITLHAIYPGASAQVMEGSVLSVIERNMNGVEGLDYMS
TSADSSGSGSVSLTFTPDTDENLAQVEVQNKLSEVLRTLPATVQQYGVTVSKARSNFLMIVMLSSD..VQSTEEMNDYAQ
RNVVPELQRIEGVGQVRLFGA.QRAMRIWVDPKKLQNYNLSFADVGSALSAQNIQISAGSIGSLPAVRGQTVTATVTAQG
QLGTAEEFGNVILRANTDGSNIYLKDVAKVGLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERLAVLEKYFP
QGMSWKTPYDTSKFVEISIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAM
ILVIGIVVDDAIVVVENVERIMAGEGLPPKEATKKAMGQISGAVIGITAVLISVFVPLAMFSGAAGNIYKQFALTMASSI
AFSAFLALTLTPALCATMLKTIPKGHHEEKK.GFFGWFNKKFDSWTHGYEGRVAKVLRKTFRMMVVYIGLAVVGVFLFMR
LPTSFLPTEDQGFVMVSVQLPAGATKERTDATLAQVTQ..LAKSIPEIENIITVSGFSFSGSGQNMAMGFAIFKDWNERT
ASGSDAVAVAGKLTGMMMGTLKDGFGIAVVPPPILELGNGSGLSINLQD.RNNTGHTGIAGEGNELIQKMRASGLFDPST
VRAGGLEDSPQLKIDINRAAAAAQGISFADIRTALASALSSSYVSDFPNQGRLQRVMVQADEDARMQPADILNLTVPNKS
GVAVPLSTIATVSWENGTEQSVRFNGYPSMKLSASPATGVSTGQAMEAVQKMV.DELGGGYSFEWGGQSSEEAKGGSQTL
ILYGLAVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVTGRNLFEGLLGSVPSFANDIYFQVGFVTVMGLSAKNAI
LIIEFAKDLQAQ.GKSAVEAALEAARLRFRPIIMTSFAFILGVVPLYIAAGASSASQRAIGTTVFWGMLVGTLLSVFLVP
LFYVVVR....KFFKETAHEHEMAVRHASKAGITGSDDKQY
>OMNI|NTL01SS01491/1-1061
MFVDFFIKRPVFSSVCAIIILLVGTISIFSLPIAQFPEVAPTTIQVSSNYSGANAEVVERAVTDILERQINGVQGMRYIS
STSSNDGTSSITVTFDRSQNKDIAAVDVQNRVALAEPQLPEAVRRTGIRVNKESNALLLGIGITSPDGEYDNVFLSNYAD
RYLVDPIRRLEGVGDVRIFGERLYAMRLWVDPMKLAAQQLTMADLSRALQEQNLQVGAGQIGAEPAPPGQEYQLDLLASS
QLVEVKDFEDLIVKSGASGSVVRFKDIGRVELGAQNYNSFLRFRGDEAVGLGIYQLLDSNALEVARLVKDEMARLAQNFP
EGIEYSVAFDTTEFVQESLSEVVETLLIAVVLVILVILVFLQDWRSALIPALTIPLALIGTFAFVKVFNFSINSLTLFGL
TLATGLVVDDAIIVVEQISRFIKVKHEDPQEAAQEAMGELTGAVIATSLVLMAVFIPVAFFPGTTGALYQQFALTIAFSI
LLSTFLALTLTPSLCALLLREGQ..EPPAFIAGFFNWFNRVLDIIKNGYGNVLGKLVNLRAWVIGVFVLLLGATAWLYVT
VPTAFLPEEDQGYFITIIQAPQGVSLQYTSRVMAQVEKELLAVP..EVTATFAVGGFSFSGNSPNQGIIFTRLKPWGERT
APNQSVQAIIGQMFGKFS.QIPEANIIPINPPPIRGLGQFGGFDFQLQDLRVNSELDTMVGTMGEILGAANQNPA..LTR
VFSTFQANNPQLIVNVNRNKAKSLGVPVDQIFQTMETALGSSYVNDFVLQGRTYRVYLQADEQFRSSPEDINSLYVRSES
GTMIPMANLVTVTQGVGAPIITHYNLFRSIAITGSANFGVSTGQAMNAMAAIARQVMPPGFDFQWSGISLEEMGSQGQAP
LIFGLGLLFVFLVLAAQYENYIDPVIILLSVPLAILGALTAQSLR...........GFPNDVYCQIGLVMLIGLSSKNAI
LIVEFANQLRA.EGYPIAKAALEASKDRLRPILMTALSTLFGIFPLAIATGAGAGSRQALGTAVFGGMLVATFLSLFVVP
VLYIVVKTISGRLLAPKSTNPEPSPEIESHTPAPASQRNS.