HMM Seed Alignment: TIGR00976

Download Alignment

>GP|216374|dbj|BAA01048.1/48-633
VEMRDGVKLATDIYLPVAKTEQEKKDGFPTLVFRTPYNKD...............................TYGKTEGPF
FAKRGYAVVVQDTRGRYKSEGEWNFV..FDDAKDGYDLIEWAAVQDFSTGKVGTMGLSYMAYTQYVLAESKPPHLVTMIP
LEGMSNPAEEVFFT..................GGAMQLDRYLSWTLGQAVDTAR.RLDE..KNGNTVNQDKIKKALDDYE
KWLNHMPRSKVAPLNQMIDWWK.EAMDH.....PEYDEYWKSISPQEQHDTWPVPTYHVGGWYD..ILLNGTSKNYIGIT
ENGPTERYLPALEKTVNIQDTQKLLIGPWTHG.YPQTAVGTFNFPKADLSDVHNAGNGADNWRLEQLRWFDYWLK..GID
NGIMDEDPVKLYIMKGENDGFWRTEKEWPIARTEYTNYYLHDGKSGTIDSLNDGILSTEKPKSGKKADSYLYDPKNPTPT
VGG.NISGTTPNDERGPQDQQGIEKDVLTYTTEVLNEDTEVTGPIKVKLWASTNAKDTDFAVKLTDVYPDGRSIIIQDSI
IRGRYHESREKET.................LLEPGKIYEFTIDLGSTANIFKKGHRIRVDVSSSNYPRFDNNPNTGHKFG
.............NDAAMKTAKNTIYHDSEHPSHIILPIIPN
>GP|7229394|gb|AAF42807.1/14-574
VPMRDGVRLAVDLYRPDADG......PVPVLLVRNPYDKFDVFAW..........................STQSTNWLE
FVRDGYAVVIQDTRGLFASEGEFVPH..VDDEADAEDTLSWILEQAWCDGNVGMFGVSYLGVTQWQAAVSGVGGLKAIAP
SMASADLYRAPWYGP.................GGALSVEALLGWSALIGTGLITSRSDA..RPEDAADFVQLAAILNDVA
GAASVTPLAEQPLLGRLIPWVIDQVVDH.....PDNDESWQSISLFERLGGLATPALITAGWYD..GFVGESLRTFVAVK
DN...............AD..ARLVVGPWSHS.NLTGRNADRKFGIAATYPIQEATT.......MHKAFFDRHLR..GET
DALAGVPKVRLFVMG...IDEWRDETDWPLPDTAYTPFYLG.GSGAANTSTGGGTLSTSISG.TESADTYLYDPADPVPS
LGG.TLLFHNGDNGPADQRPIHDRDDVLCYSTEVLTDPVEVTGTVSARLFVSSSAVDTDFTAKLVDVFPDGRAIALCDGI
VRMRYRETLVNPT.................LIEAGEIYEVAIDMLATSNVFLPGHRIMVQVSSSNFPKYDRNSNTGGVIA
R...........EQLEEMCTAVNRIHRGPEHPSHIVLPIIKR
>GP|3309643|gb|AAC26133.1/13-562
VEMRDGTVLRADVWRPAEGP......ASPAVLFRTPYGKS...PL..........................GLATLTPAQ
CVDRGYAAVVQDTRGRFGSEGEWAPLDWSQEGPDGYDTVEWTAEQPWCDGNVAMAGTSYQAIVQWLAAMEKPPHLRAIAP
TMSTSAPFDAEQLG...................GFLRLDHLTSWLGLTALEWVQRRAAAG.DPVDGAVVAEVVQLLTAPE
VPLRRWPLSTILDFEGFPGRLR............DIFAGHVATVADYHLGEVGVPTFSVGGWYD..VFSHGTIELHRAVR
ALDP.............VAGRHELVVGPWVHSGQLPQVQGEVNTGPYGSAQGARLAD.......LHLDFFDRHLRPAGGT
TGRDSGGDVRYFLFG...DDAWHRAASWPPPEAVDAPWYLA....GPADGEEGGRLLPAPPREAPGHDAFTYDPEDPVPS
HGGRVLQLGRLAAGPLNQAHLEDRPDVLCYTSEPLTEPLDAVGRQRLRLRFGSDAPATAVVAKLTDVHPDGRSLLVAEAS
LRLEAEGDGPR.......................DEPYDADLLLGDTAWRFAPGHRLRVHVTSSNFPHLDRHPNIPGPVG
.............EAEHCRTARQSVWYGGPYESVLRLSTLPA
>OMNI|NTL01SS00495/1-534
MVTRDGIRLDSDLYYPNSGG......PWPALLMRQPYGRR..LAS..........................TLVYAHPHW
YAAQGYLVIIQDVRGRGSSEGEFDLF..AHEVEDGQDCLDWVSKLPQCEGSVATYGFSYQGMTQLYAAANHHPSLKTICP
AMIAWDLYQDWAHEN..................GAFCLQNNLGWALQLATDSAKRRKDE...Q.TFRRLMRLAKSYDFSG
FQPAIPDRLGELAPDSFYHQWISQPPE......ADYWQRRSPDQRWQIREKIDIPVLQIGGWFD..PHLRGNWRLYAELE
RCG................IQQKMVVGPWGHF.PWGSRAGGQNYGESAISGVDQL..........QLAWFDHFLK...GQ
EPRFNPAKLELFDLG...TKQWRYLTDLP...STQQSWFLQCSGLGTTQGSALTAKVPARST.EEISDVWVHDPWRPVPS
LGG..HSGYP..QGVKERSTIDDRSDVVTYTSEPLQKSLTICGVPQIFLTLESDRPSFDVAVSLSQFRVTGEVWALSQGY
CTSCKQTAN..............................LEICLQAICVTLSPGDCLRISLAGASFPAYPVNPGTGQQAV
L...........ANLVDQQIITLALVTDGPTQNHLLLPILSG
>SP|Q50598|YI35_MYCTU/34-628
VTMRDGVRIAIDLYLPAGLTS...AARLPAILHQTRYYRSLQLRWP............LRMLLGGKPLQHIAADKRRRRR
FVASGYAWVDVDVRGSGASFGARVCEWSSDEIRDGAEIVDWIVRQPWCNGTVAALGNSYDGTSAELLLVNQHPAVRVIAP
CFSLFDVYTDIAFPGGIHAAWFTDTWGRYNEALDRNALHEVVGWWAKLPVTGMQPVQEDRDRSLRDGAIAAHRGNYDVHQ
IAGSLTFRDDVSASDPYRGQPDARLEPIGTPIESGSINLISPHNYWRDVQASGAAIYSYSGWFDG.GYAHAAIKRFLTVS
TPG..................SHLILGPWNHT...GGWRVDPLRGLSRPDFDHDG.........ELLRFIDHHVK..GAD
TGIGSEPPVHYFTMV...ENRWKSADTWPPP.ATTQSYYLS......ADR....QLRPDAPDCDSGADEYVVDQTAGTGE
RSR.WRSQVGIGGHVCYPDRKAQDAKLLTYTSAPLDHPLEVTGHVVVTLFITSTSSDGTFFVYLEDVDPRGRVAYITEGQ
LRAIHRRLSDGPPPYRQVVPYRTFASGDAWPLVPGEIARLTFDLLPTSYLFQPGHRIRIAIAGADASHFAILPGCAPTVR
........................VYRSRMHASRIDLPVIQP
>OMNI|MT1253/51-561
VPTRDGTLLRINVFRSAEGG......ARPVIASIHPYGKDALPRRRGNRWTFSPQYRMLRQPKPLTFSALTGWEAPDPAW
WTAQGFVVVNADSRGCGRSDGTGDLLS.HQEAEDTYDLVGWLADQAWSDGRVVMLGVSYLAISQYAVAALQPPALRAICP
WEGFTDAYRDLAFP...................GGIRESGFTRLWSRGVRRRTR....Q..............T.YDMEQ
MQEAHPLR.........................DDFWRSRVP.....DLSAIKVPMLVCGSFSDNNLHSRGSIRAFTRSG
CG.....................HAR.LYTHR....GGKWETFYSATALS..............EQLKFLRDALAGSSGS
RSVRLEVREDRDTIT.....AVREETQWPLAGTRWRPMYLAG..........PGLLATEPPP.TAGSIRFQTRSRAAAFN
WTIPEDIELTGPMAARLWVQLDGCDDANLFVGVEKWRDGQFVAFEGSYGWGRDRVTTGWQRVSLRELDPELSQPWEPVPA
CARPRPVTAG.........................EVVAVDVALGPSATLFRAGEQLRLVVGGRWLSPRNPLTGQFPAAY
P...............RPPRGRVTLHWGPRYDAHLLIPEVPG
>GP|5763952|emb|CAB53331.1/96-640
SADRSGTRLHADVLLPEGLKR...KEKVPVILSIGPYFAHAGQTGP..............EGWSRTGPSARFQDFIEGTD
LFDEGYAFVMVDLRGFGGSTGCLDWGG.PGEQADVKAAIDWAAKQPWSTGAVGMYGKSYDAVTGLIGNNLDQRALRAVVA
QEPVWDMYQYIYSN...................GVPRPNVTGTAGAYNSIASMPPMADD...DPRYQAAARYEESHPECL
TENSAGYRIS.......................DQRDPHWTSRDLARMARGSDTPLFVTQGFVEN.NTKPEEMEEYLDNH
RGP..................ERGWLGQWDHVRG.GDRVEDGRLAMGRAGWYDET...........LSFYDQYLK..GTR
PTVRYPAYAVEDSTG.....AWRAQRTWPVT.ERTVTLPLGGGSYVDDGGASARAALTASGSPAPKAPPQPAGRWDMENA
PATEQPAPAGLAAELAKRQRAGEVASSFFVWSKPLKSTTRVTGTPRVSLTARG...AGNVMLKLYDVAPDGTAVMFDEQV
SLVKSGRMS................................VDLKATDWTLAAGHVLAVEIGSIQTGSWRDTPSGETVEV
KGARLGLALDNPADDVATAGDRSPYLDTYLRQYTVSLPAGPG