HMM Seed Alignment: TIGR01784

Download Alignment

>SP|P37415|YTL2_SALTY/10-311
PHDATFRQFLTQPDIARDFMELHLPAELRAIC--DLSTLKLESGSFVEDDLRQYFSDVLYSLKTTAG-DGYIHVLVEHQS
TPDKHMAFRLIRYAVAAMQRHLEAGHKKLPLVIPVLFYTGKRSPYP--YSTRWLDEFDDTALADKLYSSAFP-LVDVTVI
PDDEIAGHRSMAALTLLQKHIHQRDLAE----LVDRLAPILLAGYLSSSQVISLVH-----YIVQAGETSDAEAFVRELA
QRVPQHGDALMTIAQQLEQKGIEKGIQLGEQRGIEKGRSEG----EREATLKIARTMLQNCIDRNTVMKMTG--LTEDDL
AQI
>SP|P31665|YADD_ECOLI/8-296
PHDAVFKQFLMHAETARDFLEIHLPVELRELC--DLNTLHLESGSFIEESLKGHSTDVLYSVQMQGN-PGYLHVVIEHQS
KPDKKMAFRMMRYSIAAMHRHLEADHDKLPLVVPILFYQGEATPYP--LSMCWFDMFYSPELARRVYNSPFP-LVDITIT
PDDEIMQHRRIAILELLQKHIRQRDLML----LLEQLVTLIDEGYTSGSQLVAMQN-----YMLQRGHTEQADLFYGVLR
DR-ETGGESMMTLA--------QWFEEKGIEKGIQQG--------RQEVSQEFAQRLLSKGMSREDVAEMAN--LPLAEI
DKV
>gi|24214508|ref|NP_711989.1/1-291
PHDRLIRETLQDKEDAISFFKNSLPEKVIELL--DLKRLELTQSSFISENLKEEQTDLLFQIPLKSGKKANVYLLFEHKS
YLDEAVFSQLLGYIS-AIYKSQFKTDKKYSVVIPFVFYHGERTWTLGNSFQDRFILSKNEEEVFKKYIPDFELELFDLSN
VDLSRLESITLRVILGVVQKIWEGDASFLG--YLGEVFELLTGLKNESKRVEIFQKLFLYIFNVREIEPTEITSLLSHSR
YN-REYEDLIMT------------TAEKLRKEGKIEG------------KIEDAKKMFKEGFKLDVVLRITG--LTEQEL
KDY
>gi|23002305|gb|ZP_00045982.1/1-255
TADPIFSWVM---EQ-GNNCRDLLRAIAPEL---HIQTAGFETQKRLKFHPAMHGIIPDIYATD----DKGRVFDIELQM
TLPDFLGKRMRYYFS-MMDQSLFMQGENYRNLPTTYLIL-----------ILPTDPLGLDQYRYNTTWSTEGFRHDPLNI
G-----QNLILLNASGTKGEITPRLQG---------FFDLMRGKI--NTNDSFIQK-------LQSDVEKYKTNPERRKE
LMDYQMKLDDMR--------------YVAKEEERVDA--------IKKMIKLSRKLNASNDFILKQLTEDYGSYFSQKEL
KQF
>gi|23002446|gb|ZP_00046122.1/1-260
TDDLMFQNVM---KD-PVNCQMFLHEVLPDL---NIQDLTVRTQERIAFNKEEKFSVLDVLIKD----SKGRRYDIEMQV
APQKDLDKRARYYMYKMMEAGFLHQGDGYGELAAVYVIF-----------ILPFDPKGKGLKRYSFTYSARE--DKSVEL
ND---ESEVIYLSSKGKKGDVSQGLDD---------FYSLMDGKS--TTNSKFIKR-------IKKTMDNYRKTEEWSEH
VMNTEQIKEMALAQ----------GVEEGKREATVSA--------ISKTVKMLKRMNQSNEQILQELKQDYSDEFSDEEL
EEF
>gi|26986249|emb|CAC82559.1/1-252
QDDFMFCQVM---KN-KNLCKTFLEMLLADKI---GNITHIASQSTVAPESEAKFVRLDILVQD----EKNNFYDIEMQV
VNEHNVAKRMRYYQS-ALDVSFLDKGEYYTNLKDSYIIF-----------VCLFDFIGKNKAVYFFENICLE--DEPIRL
RD---GTKKIIINVDAFKNIKDKALSG---------FLEYIKTG---CITTKFSER-------IEKMIRTIKQNEQARQE
YRFISAVVM--------------DAKEEGRSQGFTDG--------VNQTKRKTAAALKAMGLAKSKIAKATG--LSLAEI
EKL
>gi|23039896|gb|ZP_00071435.1/1-277
KTDYAFKKIFGS-DQSQDILISFLNAVIYDGK-NQIKSLIIINPYNPAQVQTLKDSYLDVRAVL----DDDSQVIIEMQV
ASVTAFDKRVVYNLA-KTYSTQLGPRQGYRHLKPVIGVT-----------ITDFEMFPEIEDVVNSFAFLNE--KKFFKY
TAA--EMRLVFVELPKFNKSLDELESL--V----DKWIYFIKEADSLEVIPEILGEVS----VIEKALNIANEINLSVKE
LELLEQRAIMAQDE----SGRILFAEEKGEKKGRIKG--------TIAMIILLLKERFDKVPEDEIATQLDG--LSLAYL
ESL
>GP|20520278|gb|AAM26160.1/4-293
RVDFAFKRLFGVEGN-EEILIGFLNAVLQSSLDEEIISLHLDDPHLPREQKDDKLSILDLRATL----NNGINLNIEIQV
RDKKDMIERSLFYWA-GMYYSQMTQGMKYTELRPTICIN-----------IVDFILFPGEEDFHNVGVVMNK--KSEHII
SE---NMQLHFLEIPKVIREWQEDRMD-PWEDILARWLLLFPAYEDEKLTTILEGIAMEKDPVLKKAIEDWERLSSDKDF
LRLYEAREKAIKDR--------ISEIETAEEKAAEKAAKEAAEEARIATKIEMIHNLINVGVPIEKVAEATE--LSVKEV
NEI
>gi|23115011|gb|ZP_00100286.1/1-292
KIDYAFKLIFGKEGN-EAILIAFLNAALKLPQERRIEAITIMNPELNKEYQGDKKSILDVRAET----SEGMQINIEIQL
SNQYDMEKRSLYYWA-EMYSRQIREGMAYKELAKAVTIN-----------ILDFNYLKQTSNYHNVFHLYED--EEKFQL
TD---ALEMHFMELPKLLAKWRNREIS-PWENELVRWLLLLEGADNQEILQTLEEIAM-KDPVLHQAMTAWEETSDDPRI
REAYFDRRKAVLDE-----KAAIREAELRLKEALEKGRAAGIAAGKAEGKAEVAKKLLDLGFEITKVAEATG--LSEKDI
RSL
>OMNI|NTL03CP0425/9-279
QIDFVFKKIFGTEKN-KPILINFLNAVIKPTTP--IKDVEIKNNDIDKDFLEDKFSRLDVKATT----SNKEHINIEIQV
KNEYNMIQRTLYYWS-KMYSEQIQNRDNYSKLERTVCIN-----------ILNFKYLK-NDKYHNAYRLKEI--TSNEEL
TD---LQEIHFIELPKFNEIGNKENVDVEKMDALEKWLEFLVEPES--NTVRQLELSN---EEIKLAKSELYRLSMDSKE
REQYNMREKAIYDR--------ISALESSKEEG------------KLEEKLEVAKKLLIANVDIDIINSSTG--LSKDEL
LKI
>gi|23114146|gb|ZP_00099465.1/1-280
INDYLFKYIFGRQEN-KDILLSFLNAVLSPAGEDELTDITLSDRELDPEHLKDKMSRLDILGVA----NDGSLINIEVQI
ASEKNIDKRTLYYWA-KIYQSQLQSGMLYKDLARTVTVN-----------VLNFSFLPDAQRYHSMFSLYEA--HSGLRL
NR---DLEIHFLELEKWKALSTKPRTR------LDKWLMYLSNTDP----KELEEIAMS-EPAIGKALTVEEIFLKNDKE
RYLYEMREKGIRDH--------LSAMDNAKTEGIEQGLAQGIAQGIERGKTEIALSMLKKGLSLNMIAEITD--LPIEQI
EEI
>gi|23123981|gb|ZP_00106002.1/1-266
KTDIIFYRLF---QE---FPDIFFE-LIGNPPE-EASLYQFSS---VEIKQTAFRIDGVFLPTQ--G-SENQIYFVEVQF
QADGEIYSRLIAEICLYLRQNQPSNDWGAVVLYPNRNVDT--------GNIKHYREFFTSGRVKRIYLDELG-EGASLPI
G----IATAKLVIATDDIAIVQARELID-----RTKSEINSPPKQQQLLQFIETILAYK---FPTMSREEMQQMFGLS-E
LK---QTRFYQ------------EAFQEGVEQGIEQGKVQG----IEQGKLRAVPAMLAAGLTVEQVAQALD--LSVEQV
RQA
>GP|17132971|dbj|BAB75536.1/2-273
QTDKIFYSLF---QA---FPSIFFA-IIGETDI-NPSTYEFVS---VELKETAFRIDGVFKPVNE-S-TEEPLYFVEVQF
QLDPKFYRRFFAEIFLYLRQNPSVNFWRAVVIYPQRIIEP--------DDQQPYRLILDSSQIQRIYLDELG-TASENSL
Q----LAIVQLIIASEATAIDQGRQLII-----QARQELTDEANKKQIVELIETILLYK---FTNLSREEVAAMLGIDDE
FK---KTRMYQSIK--------EDGLEEGRQEGRQEGRQEG----KLQAKLEAIPRLLALGLNVEQIAGALD--LTIEQV
QEV
>OMNI|NTL01SS00259/1-258
MFDNLCKFLA---ES---FSEDYAAWLLGRP----IKLTKLSP---TELSLEPIRADSLILEQ-----SEDLVLHLEFQT
EPDPTMGFRMLDYRVRVYRRFPQKTMHQFVIYLKRSNNDL--------VYQDSFQLGETVHRYQAIRLWEH----P-SEI
F----LQSPGLLPLAVLTQTSDPTLKLR-----EVATALEQIEDNRVKANLMAATSVFG---GILLTPELIKTILRSE-I
MK---ESAVYQ------------EILQEGEQRGLLKGKLEG----RLEAKLETIPLLKKLGLTIAEIAKELD--IDVELV
NRF