HMM Seed Alignment: TIGR01967
Download Alignment>OMNI|PP4546/9-1298
LLQNLDHAMIADRHCLRRQLHELRKRPD....EA..KLAQWVEKVQASCAQVTARQQSVPTVRYDDNLPIAAKRDEIKKA
LAENQVLVIAGETGSGKTTQLPKICLELGRGSHGLIAHTQPRRIAARSVAARVAEELGTPLGALVGYQVRFEDQSDSNTL
VKLMTDGILLAETQHDRFLERYDTIIVDEAHERSLNIDFLLGYLKTLLHRRPDLKLIITSATIDLERFSRHFDGA.....
PIIEVSGRTFPVDTWYRPLTSEQDEEGNQIEDDLTVDQAILATLDELAQHERSEGKGPGDVLIFLPGEREIRDAAEILRK
AQLRHTEILPLYARLSPAEQQRIFQPHTGRRVVLATNVAETSLTVPGIRYVIDTGTARISRYSYRAKVQRLPIEAVSQAS
ANQRKGRCGRVEPGICVRLYSEEDFNSRPAFTDPEILRTNLAAVILQMLHLRLGAIDAFPFIEPPDGKAISDGFNLLQEL
SAVNREN......QLTPIGRQLARLPIDPRLGRMLLEGARLGSLQEVLIVTSALSVQDPRERPPERQQAADQAHAQWKDV
DSDFAALVNLWRGFEEQ.RQALTANPLRNWCRKQFLNYLRLREWRDAHRQLALICRDLQLTVN.KEP..TDYQKLHKAIL
SGLLSQIGQKTE.EGDYQGARQRRFWVHPSSGLGRKRPQWVMAAELVETTKLYARMVAKIEPDWIEPLAGHLIKKNHFEP
HWEKKRGQVVAYEQITLYGLILVGRRPVHYGPIDPATSRELFIREGLVGGEIQSRAKCLAANKRLLGELDELEAKARRRD
ILADEETLYAFYEARLPAEIHQTATFDSWYRMGSQKDANLLIMREEDVLAREASEVTAAQYPDSMQVGDLRLPLSYHFEP
GHPRDGVTVRVPAPLLPSLPGERLEWLVPGLLEAKCVALVRNLPKALRKNFVPVPDFVKASLARMTFGQGALPQALGQEL
LRMTGARVSDEAWDESVNQVEGHLRMNIEVVDGQG.KFLGEGRDLAELTARFAAASQAALAVPRD..AKGEQ.PVQAKAF
SEVKQTAQQKI.AGLSMTVYPALVEDNGTVREGRFSTQAEAEFQHRRALQRLLLQQLAE.PAKFLRGKLPGLTELGLLYR
EMGRVEALVEDILLASLDSCILEGEQP...LPREGAALAALAERKRGSWAEHAERLARQTLEVLKLWHGLQKRFKGKIDL
SQAVALNDIKQQLGNLVYPGFVRETPGVWFKELPRYLKAVELRLEKLGSQVQKDRVWSGELANLWAQYKARADKHAQEGK
RDEQLTVYRWWLEEYRVSLFAQQLGTKVPISDKRLSKQWSQ
>OMNI|NT01MC0977/13-1301
WAEDVAHTMIRHRHGLRRALGALQQDHRQGRAIAPHALEKFRQRLTASCDEVAKRRQQLPILRYPEQLPISSKREAIQQA
IAQHQIIVLSGETGSGKTTQLPKICLELGLGVHGYIGVTQPRRIAASGIAQFLASDLGTPLGEKVGYKVRFHDQVGEHAL
VKVLTDGMLLAETQQDRFLSRYEAIIIDEAHERSLNIDFLLGLLKGITVRRPDLKIIISSATLDTDKFAAHFNHA.....
PIISVSGRTYPVAVRYNPLDEKNEPD......SDQRMEALLFAVEELFEDLPD.....GDVLIFLPGEREIKEAAEALRK
HHPAHVEIVPLYARLSAKEQQRIFNPGSKRRIILSTNVAETSLTVPRIHGVIDTGLARMSRFSTRTQVQRLPIERISQAS
ANQRKGRCGRLAAGICIRLYSEDDFNQRPLYTDPEVLRTSLAAVILTMKALKLGDPHKFPFIDAPKPTAIREGIRLLKEL
DGLDDNE......NLTDIGRQLAHLPLDPRLARMLLAAERFHCLQELLILAAALSTQDPREFPEAEKGGAKQHHARFSEP
RSEFIGRLRLWRHIEEMAEQARSKTQLRNALKKQYLSPLRVREWQDITHQLTRTVKELGLKLN.EAP..GDYAAIHKALL
AGLLGNLGMKGE.KHQYDGVRGLSFHIFPGSELFGKSPKWVVAAELVETSKLYARLLAQIEPEWVEEVAPHLVKKHPFDP
HWEKRAAQTMVYERVTLFGLTLIPKRSVPYAPIAPADARAMFIHNGLVAGDMHSNAPFYQHNRALIEEAEGLEHRTRERG
YLADDQALFDFFDGVLPPDINNLQALDQWRRSAERKNPKALFLPREVVFQQRAN.LDDAQFPGHITLRDHELALIYQFNP
GQGNDGVTTVIPLPVLNQFRTADFQWLVPGLLEEKIVGLFKILPKRYRRHLVPLPQTAKWCAAQLPFNQGTLTALLARLI
EPKVGEEIPPDAWQ..WENLPEHLQMNFRIVDDSNRKVLAQGRDLALLQEHYAEDARDRFEALPK..VSHEKSGLLNWNF
DPLPLRMALMTERNRPITCYPALRDDGGSVGIAMAETQEQAQRMHHAGLRRLLLLQVHQ.QVKMVQKNPPISNQALAHYT
HLERKEVLVKSLLHAAADRVFFENQGVLPEQVRNQADFQKILAQGRAHLIPEVEAMGKLLDETFVQFGLLRNALKKPMYP
TQQKVAMDIEAHLDKLLGQGFLRTTPPQWLSHLPRYLKAMLLRLERGRHNSGKDLERQAEYSVWQEKYDRLMEKYQHETH
LPAALVLFRWALEEYRVSLFAQDLKTAIPVSHKRMEGYYRD
>SP|P43329|HRPA_ECOLI/12-1297
LQQRLDSLMLRDRLRFSRRLHGVKKVKNPDAQQA..IFQEMAKEIDQAAGKVLLREAARPEITYPDNLPVSQKKQDILEA
IRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTM
VKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRHFNNA.....
PIIEVSGRTYPVEVRYRPIVEEADD......TERDQLQAIFDAVDELSQESH......GDILIFMSGEREIRDTADALNK
LNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQAS
ANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEEL
GAITTDEQAS.AYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRRFHDK
ESDFLAFVNLWNYLGEQ.QKALSSNAFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVN.SEP..AEYREIHIALL
TGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWVMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRTYSEP
HWERAQGAVMATEKVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRD
ILVDDETLFEFYDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGNLKLRLSYQFEP
GADADGVTVHIPLPLLNQVEESGFEWQIPGLRRELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVKPLELPLLDSLEREL
RRMTGVTVDREDWH..WDQVPDHLKITFRVVDDKN.KKLKEGRSLQDLKDALKGKVQETLSAVAD..DGIEQSGLHIWSF
GQLPESYEQKR.GNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPS.PIKYLHEKLPNKAKLGLYFN
PYGKVLELIDDCISCGVDKLIDANGG....PVWTEEGFAALHEKVRAELNDTVVDIAKQVEQILTAVFNINKRLKGRVDM
TMALGLSDIKAQMGGLVYRGFVTGNGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARR
EDEDVKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQ
>OMNI|SO2229/11-1292
SSAFLQQCFQSDASRIRRRLFKLHKEADSDKKTQ..ELAKLAEQAQAAFEKVEQRLKARPRINYPDNLPVSGMREDIAKA
ISANQVVIIAGETGSGKTTQLPKICLELGLGSRGFIGHTQPRRLAARSVASRVAEELQSPLGEVVGFKVRFADALKSESY
IKLMTDGILLAELTSDRYLDQYDTIIIDEAHERSLNIDFILGYLKQILKKRPDLKIIITSATIDVERFSKHFNNA.....
PIIEVSGRTYPVETRYRPLVQDTEA.......DLDQIEGIFAAVDELVAEGL......GDILIFMNGEREIRDTAEQLNR
RNYRDTEILPLYARLSYGEQSKVFSSHTGRRIVLATNVAETSLTVPGIRYVIDPGTARISRYSYRTKVQRLPIEPISQAS
ANQRQGRCGRVGPGICIRLYDEADFNNRPAFTDPEILRTNLASVILQMLAIGLGDIAAFPFIEPPDPRHIRDGFLLLEEL
QAVKQQKGN...IVLTPLGRQLSQIPVDPRLARMVIESHQLGCLNEVLVIASGLSIQDPRERPMDKKQASDEAHRRFADP
QSDFVSWVNLWQHLKEQ.QKELSASQFRKKCRDEYLAYLRVREWQDLYTQLKQAVHDLKWRLN.DTP..ANYDALHRALL
SGLLSHIGFKDN.NNEYLGARNRKFFVFPGSPLAKKGPKWIMAAELMETSKLFARCCAKIEPEWLEPLAAHLIKKNHLEP
HFEAKQGSVIAFENQVLYGLTVVHRRRVQYGPINPVEAREIFIRSALAEGQLQTKEAFFIANQKLLEDVEALEHKSRRRD
ILVDEQVLMDFYEPRIPEGIYNAPKFFSWWKEARCTQPDLLDFNKSLLMQRSADHISALDFPDTWHKGNIRLQLSYHFDP
AASDDGVSVHIPVALLNQIDDTDFDWLVAGMREEKCVALIKSLPKGLRRNFVPAPDYARACVQAMQPFSASLLDAMCKQL
LRMSGTRVNPEDFD..VSQMPVHLQMNFKIEDDKG.KLVAQGRVLDSLKAELQGVVAKAIRQVAN..KGIEKEALTEWSF
GDLPKQFEQRK.GNYQVRAFPALIDNKDSVAIKLFDDEFEAEAAHRQGLRRLLLLNIPS.PVKHLQQALPNKAKLAMYFN
PFGQVQILIDDIIAAAVQQLLDEKAL....DVRDAAQFDAAKDWVRQELNPTAEQIALKVEQILTLYQGIKKRTKGKISL
DIAFAMSDIQSQLDQLVFKGFVEACGWKRLADVARYLKAIETRIDKLPVDPTRDRLHMQSITKVQDALAAQLAKVPRSQP
TPAALIEARWMIEEYRVSCFAQALGTAYPISEKRILNHILL
>OMNI|NTL01CE1819/13-1300
LYELLDGVSLTDERSFRRRLQKARSPR.........ALTAIRTDIDKARQRVEARAALVPEITYPQSLPVSARREDIAEA
ISENQVVIIAGETGSGKTTQIPKICLELGRGRRGLIGHTQPRRLAARTVAERIADELGQGIGETVGYAIRFDDRVSPSTS
VKLMTDGILLAEMQRDRFLNAYDTIIIDEAHERSLNIDFLLGYLRQLLPKRPDLKVIITSATIDPERFATHFADAEGKPA
PIIEVSGRTFPVEIRYRPLEVVQGDK....VIDIDPLDGLCDAIEELMAEGP......GDILCFFPGERDIRDAMEIIEG
RRWKGVEVTPLFGRLSNEEQHRVFRPHSGRRIVLSTNIAETSLTVPGIHYVVDTGTARISRYSVRTKVQRLPIEPISQAS
ANQRSGRCGRVADGIAIRLYSEEDFESRPEFTDPEILRTNLASVILRMASLRLGDITDFPFVQAPEQRSIRDGLLLLHEL
GALAEDVAEDGSPQLTPIGRDLAQIPVDPRMARMLVEAHRLGALHPVMIIVAAMTIQDVRERPLEFQAQADQAHARFKEI
TSDFLSYLKLWEYISDQ.RDNTSGNAFRKQMKKEFLHYMRIREWWDLVRQLEQVGLQLGWSAKENVAGTASPDIIHQSLL
SGLLSQIGARDGDSREFSGSRGTKFMIFPGSPLSKKPPQFIMAGQLVETSRLWARDVAKIEPEWVEKIAGPLLKHQYSEP
HWSTKRGAAMAHQKSTLYGVTIIADKVVPYHRVDPAAARDMFIRHALVQGEWTTHHRFFHDNAAKLEDIAELEAKARRRD
IIVDEDTLFDFYDSRLPETITTSRHFDSWWKKTSRNQPDLLDFDPEKLVNADAGVIPEEAFPDRWEKGGLIFDLSYHFEP
GHRDDGVTVLIPVPVLGGLDNEGFDWLVPGVRLDLVTELIRTLPKALRRTVVPAPDFARRALPLLHPYASPLTSQLADAL
RSLGGSGINASDFS..PGKLPDHLRITYAAVDKRG.KIIDRDKDLTALKERRASQIRASVSRVARTSEQDEVPSWTRETL
GTIDEEIDTTV.DGQKVTAFPALVVTPTGVSVKVFPTRAAADASMVTSTLTLLMREIEVNPKQMLKG.LPLQQRVAVDNY
PHGGSEGLVADARVAAIRDLMFAHGG....AVRTPEEFEKLLATVKPAVAGEVRRTIVELAPALVRFANITAELEGWTGP
....AIDDMTAQLEFLLPAHAISIHGAQRLRHLPRYLHAMAIRLEEMNRDPDRDADRQDEIQGVEKYLEDRLAKLPSNRR
NTREVRDIRWQIQELRVSLFAQRLGTPKPVSAQRVRKMVDK