HMM Seed Alignment: TIGR02013

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>SP|P00575|RPOB_ECOLI/8-1339
KKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD...........PEG....QYGLEAAFRSVFPIQSYSGNSELQYVS
..YRLGEPVFDVQ...ECQIRGVTYSAPLRVKLRLVIYEREAPEGT...VKDIKEQEVYMGEIPLMTDNGTFVINGTERV
IVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFD.PKDNLFVRIDRRR...KLPATIILRALNYTTEQI
LDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEAN..GKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVA
KDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDH......GPYISETLRVDPTNDRLS...ALVEIYRM
MRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEG.................................
...............SGILSKDDIIDVMKKLIDIRNG......................................KGEVD
DIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDL..DTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPL
SEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR..KVTDGVV
TDE.IHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKG.ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDAN
RALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAG......IDIY
NLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI
HIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKAS
DVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLV...........
.AGGVEAEKLDKLPRDRWLE..........LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKI
VKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKIN
AMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSD....EEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLP
TS........GQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWA
LEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIEL
>OMNI|CC0502/8-1353
KKRIRKSFGRIPEAVQMPNLIEVQRSSYEQFLQRE...........TRPGLRRDEGVEAVFKSVFPIKDFNERAVLEYVS
..YEFEEPKYDVE...ECIQRDMTFAAPLKVKLRLIVFETEEETGARS.VKDIKEQDVYMGDIPLMTDKGTFIVNGTERV
IVSQMHRSPGVFFDHDKGKTHASGKLLFAARVIPYRGSWLDFEFD.AKDIVYVRIDRRR...KLPATTFLYALGMDGEEI
LTTFYDVVPFEKRSGGWATPYKPERWRGVKPEFPLVDADTGEEVAPAGTKITARQAKKFADGGLKTLLLAPEALTGRYLA
RDAVNMATGEIYAEAGDELDVTSIQALADQGFSTIDVLDIDHVTV......GAYMRNTLRVDKNAIRED...ALFDIYRV
MRPGEPPTVEAAEAMFKSLFFDAERYDLSSVGRVKMNMRLEQDVSDE.................................
...............VRILRKEDVLAVLKVLVGLRDG......................................RGEID
DIDNLGNRRVRSVGELLENQYRVGLLRMERAIKERMSSVDI..DTVMPHDLINAKPAAAAVREFFGSSQLSQFMDQTNPL
SEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATHARVNKYGFIESPYR..RVKDGKP
QDE.VVYMSAMEESKHVIAQSNIKVAEG.EIVEDLVPGRING.EPTLLQKETVDLMDVSPRQVVSVAAALIPFLENDDAN
RALMGSNMQRQAVPLVQSDAPLVGTGMEAVVARDSGAVVIAKRTGVVEQIDGTRIVIRAT.EETDPARSG......VDIY
RMSKFQRSNQSTCINQRPLVKVGDRIVAGDIIADGPSTELGELALGRNALVAFMPWNGYNFEDSILISERIVRDDVFTSI
HIEEFEVMARDTKLGPEEITRDIPNVGEEALRNLDEAGIVAIGAEVQPGDILVGKVTPKGESPMTPEEKLLRAIFGEKAS
DVRDTSLRLPPGVAGTIVDVRVFNRHGVDKDERALAIERAEIDRLGKDRDDEFAILNRNISGRLKELLIGKVALSGPKGL
SRGEITAEGLAQVASGLWWQ..........IALEDEKAMGELESLRRLFDENRKRLDRRFEDKVDKLQRGDELPPGVMKM
VKVFVAVKRKLQPGDKMAGRHGNKGVISRILPIEDMPFLADGTHVDVVLNPLGVPSRMNVGQIFETHLGWACANLGKQIT
NLLEDWQQGGQKQALVERLTEIYGPDEELPDT....E....EGLVELARNLGKGVPIATPVFDGARMDDIEGHLEMAGVN
KS........GQSILFDGLTGEQFKRPVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWA
LEAYGAAYTLQEMLTVKSDDVAGRTKVYESIVRGDDTFEAGIPESFNVLVKEMRSLGLNVEL
>SP|P37870|RPOB_BACSU/10-1144
RHRQRRSYARISEVLELPNLIEIQTSSYQWFLD.....................EGLREMFQDISPIEDFTGNLSLEFI.
.DYSLGEPKYPVE...ESKERDVTYSAPLRVKVRLINKE..........TGEVKDQDVFMGDFPIMTDTGTFIINGAERV
IVSQLVRSPSVYFSGKVDKNGKK...GFTATVIPNRGAWLEYETD.AKDVVYVRIDRTR...KLPVTVLLRALGFG....
................................................................................
..................................SDQEILDLIGE......NEYLRNTLDKDNTENSDK...ALLEIYER
LRPGEPPTVENAKSLLDSRFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAETLVDPETGEILAEKGQILDRRTLDKVL
PYLENGIGFRKLYPNGGVVEDEVTLQSIKIFAPTDQEGEQVINVIGNAYIEEEIKNITPADIISSISYFFNLLHGVGDTD
DIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDT..NTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPL
AELTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAKVNRFGFIETPYRRVDPETGKV
TGR.IDYLTADEEDNYVVAQANARLDDEGAFIDDSIVARFRG.ENTVVSRNRVDYMDVSPKQVVSAATACIPFLENDDSN
RALMGANMQRQAVPLMQPEAPFVGTGMEYVSGKDSGAAVICKHPGIVERVEAKNVWVRRYEEVDGQKVKGN.....LDKY
SLLKFVRSNQGTCYNQRPIVSVGDEVVKGEILADGPSMELGELALGRNVMVGFMTWDGYNYEDAIIMSERLVKDDVYTSI
HIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDDRGIIRIGAEVKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAR
EVRDTSLRVPHGGGGIIHDVKVFNRE......................................................
....................................................................DGDELPPGVNQL
VRVYIVQKRKISEGDKMAGRHGNKGVISKILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHMGMAAR.......
...................................................YLGIHIASPVFDGAREEDVWETLEEAGMS
RD........AKTVLYDGRTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGHGFGEMEVWA
LEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGDNVPEPGVPESFKVLIKELQSLGMDVKI
>OMNI|NTL02SC4454/18-1122
TAPLRISFAKIKEPLEVPNLLALQTESFDWLLGNDAWKARVESALESGQDVPTKSGLEEIFEEISPIEDFSGSMSLTFR.
.DHRFEPPKNSID...ECKDRDFTYAAPLFVTAEFTNNE..........TGEIKSQTVFMGDFPLMTNKGTFVINGTERV
VVSQLVRSPGVYFDSSIDKTSDKD..IFSAKIIPSRGAWLEMEID.KRDMVGVRIDRKR...KQSVTVLLKALGWT....
................................................................................
..................................TEQ.ILEEFGE......YESMRATLEKDHTQGQDD...ALLDIYRK
LRPGEPPTREAAQTLLENLYFNPKRYDLAKVGRYKVNKKLGADEPLD.................................
...............AGVLTTDDVIATIKYLVKLHAGETETVGESG..........................REIVVETD
DIDHFGNRRIRNVGELIQNQVRTGLARMERVVRERMTTQDV..EAITPQTLINIRPVVASIKEFFGTSQLSQFMDQNNPL
SGLTHKRRLNALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGSLASYGRINPFGFIETPYR..KVVEGQV
TDD.VDYLTADEEDRFVIAQANAALGDDMRFAEARVLVRRRGGEVDYVPGDDVDYMDVSPRQMVSVATAMIPFLEHDDAN
RALMGANMMRQAVPLIKSESPLVGTGMEYRSAADAGDVVKAEKAGVVQEVSADYITT........TNDDGT.....YITY
RLAKFSRSNQGTSVNQKVIVAEGDRIIEGQVLADGPATENGEMALGKNLLVAFMPWEGHNYEDAIILSQRLVQDDVLSSI
HIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGAEVVAGDILVGKVTPKGETELTPEERLLRAIFGEKAR
EVRDTSLKVPHGEIGKVIGVRVFDRE......................................................
....................................................................EGDELPPGVNQL
VRVYVAQKRKITDGDKLAGRHGNKGVISKINPIEDMPFLEDGTPVDIILNPLAVPSRMNPGQVLEIHLGWLASRGWDVSG
LAEEWAQ..................................RLQVIGADKVEPGTNVATPVFDGAREDELAGLLQHTIPN
RDGERMVLPSGKARLFDGRSGEPFPEPISVGYMYILKLHHLVDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWA
LEAYGAAYALQELLTIKSDDVTGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEV
>OMNI|NTL01TE0640/1-1054
...MASNQIYTPPAFTLPDLVEIQRASFRWFLE.....................EGLIEELESFSPITDYTGKIELHFLA
KDYRLKEPKYSVD...EAKRRDATYSMQMYVPTRLINKE..........NGNIIDQDVFIGDLPLMTDRGTFIINGAERV
IVNQIVRSPGVYYKSETDKNGRR...TYNASLIPNRGAWLKFETD.KNDLLWVRIDKTR...KLSAHVLLKALGL.....
................................................................................
..................................TDSEILERLRH......PEYYQKTVEKEGKFSEEE...ALIELYKK
LRPGEPPTVSGGQQLLESRFFDPKRYDLGRVGRYKLNRKLQLNIPDS.................................
...............VRILTPEDILAAIDYLINLEFD......................................LGTID
DIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSDT..DSLTPTSLVNPKPLVAAIKEFFGSSQLSQFMDQTNPL
AELTHKRRLSALGPGGLTRERAGFAVRDIHPSHYGRICPIETPEGPNAGLIGSLATHARVNEYGFIETPFYPVKDGRVLK
DQP.PIYMTADEEDDKRVAPGDVPTDENGYILGDVVPVRYRQDFTTTTP.DQVDYVAVSPVQIISVATSLIPFLEHDDAN
RALMGSNMQRQAVPLLRPQRPLVGTGLEAQAARDSGMVILSQTNGVVSYVDANQIRV........KTDNGP.....EITY
TLQKYQRSNQDTCLNQRPIVFVGDRVQAGQVIADGSATEGGELALGQNILVAYMPWEGYNYEDAILISERLVQEDVYTSI
HIEKYEIEARQTKLGPEEITREVPNVSEEALRQLDENGIIRIGAFVEAGDILVGKVTPKGESDQPPEEKLLRAIFGEKAR
DVRDNSLRVPNGEKGRVVDVRVFTRE......................................................
....................................................................QGDELPPGANMV
VRVYVAQKRKIQVGDKMAGRHGNKGIISRILPVEDMPFLPDGRPVDIVLNPLGVPSRMNVGQVYECLLGWAGACLG....
.........................................RRFKITPFDEMHGKEKSRETVHAKLQEARDVTGQDWVFN
PEN......PGKMVVYDGRTGEPFDRPVTVGMAYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWA
LEAYGAAYILQELLTVKSDDMQGRNEALNAIVKGQSIPRPGTPESFKVLMRELQSLCLDISV
>SP|O84317|RPOB_CHLTR/3-1247
KCPERVSIKKKEDILDLPNLVEVQIKSYKQFLQIG...........KLAEERENIGLEEVFREIFPIKSYNEATILEYLS
..YNLGVPKYSP...EECIRRGITYSVTLKVRFRLTD.....ETG.......IKEEEVYMGTIPIMTDKGTFIINGAERV
VVSQVHRSPGINFEQEK..HSK.GNVLFSFRIIPYRGSWLEAVFD.INDLIYIHIDRKKRRRKILAMTFIRALGYSTDAD
IIEEFFSVE.......................................................ERSLRLEKDFVALVGK
VLADNVVDADSSLVYGKAGEKLSTAMLKRILDAGVQSLKIAVGAD.....ENHPIIKMLAKDPTDSYEA...ALKDFYRR
LRPGEPATLVNARSTIMRLFFDAKRYNLGRVGRYKLNKKLG.......................................
......FPLDDETLSQVTLRKEDVIGALKYLIRLRMGDE....................................KTSID
DIDHLANRRVRSVGELIQNHCRSGLARMEKIVRERMNLFDFSSDTLTPGKIISAKGLVSVLKDFFSRSQLSQFMDQTNPV
AELTHKRRLSALGPGGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETPYRVVRDG.IVT
DE..IEYMTADVEEECVIAQASAELDEYDMFKTPVCWARYKG.EAFEADTSTVTHMDVSPKQLVSVVTGLIPFLEHDDAN
RALMGSNMQRQAVPLLKTEAAIVGTGLEGRAAKDSGAIIVAQEDGVVEYVDSYEIVVAKKNNPT...........LKDRY
QLKKFLRSNSGTCINQTPLCSVGDVVTHGDVLADGPATDKGELALGKNVLVAFMPWYGYNFEDAIIISERLIKQDAYTSI
YIEEFELTARDTKLGKEEITRDIPNVSEEVLANLGEDGVVRIGAEVKPGDILVGKITPKSETELAPEERLLRAIFGEKAA
DVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEEAVHLKDLQKEYKSQLAQLKVEHREKLGALLLNEKAPAAIIH
RRSADILVQEGAIFDQETIELLERESLVDLLMAPCDMYDVLKDILSSYETAVQRLEVNYKTEAEHIKEGDADLDHGVIRQ
VKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPFLANGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAG....
......................................................IYVKTPVFEGFPESRIWDMMIEQGLP
ED........GKSYLFDGKTGERFDSKVVVGYIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWA
LEAYGVAHMLQEILTVKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVRP
>OMNI|NTL01FN0501/3-1138
KLIERLDFGKIKARGEMPHFLEFQLNSYEDFLQTN...........MSPNKREEKGFELAFKEIFPIESSNGDVRLEYIG
..YELHEAEAPLNDELECKKRGKTYSNSLKVRLRLIN.....KKMG....NEIQESLVYFGEVPKMTDRATFIINGAERV
VVSQLHRSPGVSFSKEV..NTQTGKDLFSGKIIPYKGTWLEFETD.KNDFLSVKIDRKK...KVLATVFLKAVDFFKDNN
EIRDYFLEVKELKLKALYKKY.........................................SKEPEELLNVLKQELDGS
IVKEDILDEETGEFIAEAEAFINEEVINKLIENKVDKISYWYVGP.....ESKLVANTLMNDTTLTEDE...AVVEVFKK
LRPGDQVTVDSARSLIRQMFFNPQRYDLEPVGRYKMNKRLK.......................................
......LDVPEE...QISLTKEDVLGTIKYVIELNNGEQ....................................NVHTD
DIDNLSNRRIRGVGELLLMQIKTGLAKMNKMVREKMTTQDI..ETVTPQSLLNTRPLNALIQDFFGSGQLSQFMDQSNPL
AELTHKRRISALGPGGLSRERAGFEVRDVHDSHYGRICPIETPEGPNIGLIGSLATYAKINKYGFIETPYVKVENGVALV
DD..VRYLAADEEDGLFIAQADTKLDKNNKLQG.LVVCRYGH.EIVEIEPERVNYMDVSPKQVVSVSAGLIPFLEHDDAN
RALMGSNMQRQAVPLLKSEAPFIGTGLERKVAVDSGAVVTTKVSGKVTYVDGKKIIIEDKDK.............KEHIY
RLLNYERSNQSMCLHQTPLVDLGDKVKAGDIIADGPATKLGDLSLGRNILMGFMPWEGYNYEDAILISDRLRKDDVFTSI
HIEEYEIDARTTKLGDEEITREIPNVSESALRNLDENGVIMIGSEVGPGDILVGKTAPKGETEPPAEEKLLRAIFGEKAR
DVRDTSLTMPHGSKGVVVDILELSR.......................................................
...................................................................ENGDELKAGVNKS
IRVLVAEKRKITVGDKMSGRHGNKGVVSRVLPAEDMPFLEDGTHLDVVLNPLGVPSRMNIGQVLEVHLGMAMRTLNG...
.....................................................GTCIATPVFDGATEEQVKDYLEKQGYP
RT........GKVTLYDGRTGEKFDNKVTVGIMYMLKLHHLVEDKMHARAIGPYSLVTQQPLGGKAQFGGQRLGEMEVWA
LEAYGASNILQEMLTVKSDDITGRTKTYEAIIKGEAMPESDLPESFKVLLKEFQALALDIEL
>OMNI|CT0155/7-1298
TPTPCIDFSKIQSIINPPDLLKVQLDSFHNFIQDS...........VPLEKRKDQGLEKVLRSAFPITDTRGLYLLEYIS
..YSFDKPKYTV...EECIERGLTYDVSLKIKLKLSYKDEADEPDW....KETIQQEVYLGRIPYMTDRGTFIINGAERV
VVAQLHRSPGVVFSEAV..HPN.GKKMYSAKIVPTRGSWIEFQTD.INNQIFVYIDQKK...NFLVTALLRAIGFAKDED
ILGLFDLVEEVEVSSK..............................................SSKREQLLGQYLASDIID
MTTGEVVPAR.........AAITEEIIDQIVAAGYKTVKVMKTTSPEKGVDKSVIINTILNDSSATEEE...ALEIVYEE
LRSNEAPDIDAARSFLERTFFNQKKYDLGDVGRYRIQKKLQNELAELSAYLEKRPELKELSDAIYER............I
LQTISTYSEEPIGEDILVLTHYDIIAVINYLIKLING......................................MAEVD
DVDHLANRRVRSVGEQLAAQFVIGLARMGKNVREKLNSRDT..DKIAPADLINARTVSSVVSSFFATSQLSQFMDQTNPL
AEMTNKRRVSALGPGGLTRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVYAEINDKGFIQTPYRVVENGQVTD
K...VVMLSAEDEENKITVPVSIELDENNRIAAESVQARTKG.DYPLVLAEEVNYMDVSPVQIVSAAAALIPFLEHDDGN
RALMGANMQRQAVPLLVSEAPIVGTGMEAKVARDSRAVIVAEGPGVVQCVTADRIEVRYDLDPENNTVSLLDPDEGVKVY
KLIKFKRSNQDTCISQRPLVHNGQRVNAGDVLADSSSTDNGELALGKNVLVAFMPWRGYNFEDAIVLSERLVYDDVFTSI
HVHEFESSVRDTKRGEEQFTRDIYNVSEDALRNLDENGIVRIGAEVKERDILVGKITPKGESDPTPEEKLLRAIFGDKSS
DVKDASMHVPAGMKGIVIKTKLFSR..KKKIGMDVKERMEAIDKQFDLKEADLRSRFAKWMKQYLNGKKSVAITSDKGKV
LVPEGTVIDEALLAKFNGLPFLESIDLSKGIVSGAKTNENVVRLIREYRLKLKDLSDERENE.KYKINVGDELPPGIEEL
AKVYIAQKRKIQVGDKMAGRHGNKGVVGKILPIEDMPFMEDGTPVDIVLNPLGVPSRMNIGQLYETSLGWAGKKLG....
......................................................VKFKTPIFSGATYTEVQEYLEKAGLP
GH........GKVKLFDGRTGEQFHDEVTVGYIYMLKLSHLVDDKIHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWA
LEAYGAANILREMLTVKSDDVIGRNKTYEAIVKGQNLPEPGTPESFNVLIRELQGLGLEIRI
>OMNI|PG0394/5-1268
TNNKRINFASIKNPLFYPDFLEVQLKSFHDFLQLD...........TPPERRKKEGLYKVFAENFPITDTRNNFVLEFLD
..YYIDPPKYSI...EECLSRGLTYSVPLKAKLKLYCTDPDHED......FATVIQDVFLGPIPYMTSSGTFVINGAERV
IVSQLHRSPGVFFGQSL..HTN.GTKLYSARIIPFKGSWIEFATD.INNVMYAYIDRKK...KLPVTTLLRAIGFEADKD
ILDIFNLAEEVKVTKANLKKCI........................................GRKLAARVINTYIDDLSD
EDTGEVVSMERITVVVDREVELTEDNIEAILNSNTQTILLHRNDS..NTSDYSIIFNTLQKDPCNSEKE...ALYYVYRQ
LRNAEPADDASAREVITNLFFSDKRYDLGDVGRYRINKKLN.......................................
.........LNIDPDIKVLTNEDIIEIIKYLIELVNS......................................KASVD
DIDHLSNRRVRTVGEQLYNQFGIGLARMARTVRDRMNVRDN..EVFTPIDLVNAKTISSVVNSFFGTNALSQFMDQTNPL
AEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYAKISDLGFITTPYREVKNGKVDF
SDNGLKYYTAEEEEEKTVAQGNAPLDENGRFVRERVKARYES.DFPLVTPDEVDLMDVSPTQIASIAAALIPFLEHDDAN
RALMGSNMMRQAVPLLRPESPIVGTGIEGKLVKDSRTQIVAERGGEVVFVDASCIKIRYDRTADEEFVSFDD...AIVTY
YLPKYRKTNQSTTIDLHPICSKGDRVEAGQILTEGYSTQGGELALGRNVQVAYMPWKGYNYEDAIVLNERMVREDFFTSV
HVDEYILEVRETKRGLEELTSDIPNVSEDATRDLDENGIVRIGAHIEPGDILIGKITPKGESDPTPEEKLLRAIFGDKAG
DVKDASLKATPSLRGVVIDTKLFSKAAKKKSRTSTKEAVSKLDETYAKRQQQLHERLIDKLTELTKGKTCCGVKDYLNVE
LIKAGSKFAKKDLEALD....FNVIQLSD.WTNDAHTNELIKAVAVNYLKHSKEIEAELRRR.KLDETIGDELPAGIVQM
AKVYIAKKRKIQVGDKMAGRHGNKGIVSKIVRQEDMPFLADGTPVDICLNPLGVPSRMNLGQIFEAVLAWAGRKMN....
......................................................VKFATPIFDGASLNDMNEWTDKAGLP
RD........GKTYLYDGGTGERFDQPATVGVTYFLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWA
LEAFGASHILQEILTVKSDDVVGRSKAYEAIVKGDPMPTPGIPESLNVLLHELKGLGLSFSL
>SP|O83269|RPOB_TREPA/7-1153
KTHRVYVGRDVRNFMDIPDLIEIQLRSYDTFLHGARNTPSG..ADTLISGTREELGLEDVFKTTFPIESSTGDMTLEYQS
..YSLDEKNIKFS.EAECKQKGLTYAIPLKALVDLRFNN..........TGEIRRKDIYMGDIPKMTERGTFIINGAERV
VVSQIHRSPGVVFSHEK...DKEGREVFSSRIIPYRGSWLEFEIDQKKDLIYAKLDKKR...RILGTVFLRALHYETREQ
IIEAFYAIEKTPVCQDRAEYELLTG....................................KILARSVTVENEQGETRVL
YKAGEKIHPHVIDDLLQNGICEVYIINLEAEGSLRSAVVINCLER......EEMKFSKSGAQDELSREE...ALCIVYSA
LRPSDPMTMDAAEKDLQTMFFSPRRYDLGRVGRYKLNKKFRSDSPTT.................................
...............ECTLTLDDIVNTMKFLIRMYSG......................................DAQED
DIDHLGNRRIRSVGELMTNTLKTAFLRMERIAKERMSSKET..ETIKPQDLISIKPIMAAIKEFFGASQLSQFMDQVNPL
AELTHKRRLNALGPGGLSRERAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSMANYARVNGYGFLEVPYVRVRDGVVTK
EIE...YLDAMDEDRYYIGQDSTAVGPDGVIRVDHVSCRHRG.DYSTRSPKDIQYMDVSPKQIISVSASLIPFLEHDDAN
RALMGSNMQRQGVPLIFPEPPRVGTGMEEKCAYDSGVLVKAKQDGTVAYVSSEKIVVCSAAASGEEQ.........EVVY
PLLKYQRTNQDTCYHQRPIVHVGDRVQVGDALADGPATYRGELALGRNILVGFVPWNGYNYEDAILISHRVVKEDMFTSV
HIKEFSTEVRETKLGSERMTNDIPNKSEKNLDNLDAEGIIRIGSKVRAGDVLIGKITPKSESETTPEFRLLNSIFGEKAK
EVRDSSLRVPHGVEGTVIDVQRLRRS......................................................
....................................................................EGDDLNPGVSEV
VKVLIATKRKLREGDKMAGRHGNKGIVARILPEEDMPYLDDGTPLDVCLNPLGVPSRMNIGQILESELGLAGLRLD....
......................................................EWYESPVFQSPSNEQIGEKLMQAGFP
TN........SKVMLRDGRTGDYFQNPVFVGVIYFMKLAHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWA
LEAYGAANTLQELLTIKSDDMHGRSKIYEAIVKGEASSPTGIPESFNVLVQELRGLALDFTI
>OMNI|HP1198/8-1371
KNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSK...............EGKESGIEKVFKSIFPIQDEHNRITLEYAG
..CEFGKSKYTVR...EAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQSIFIREIPLMTERTSFIINGVERV
VVNQLHRSPGVIFKEEES.STSLNKLIYTGQIIPDRGSWLYFEYD.SKDVLYARINKRR...KVPVTILFRAMDYQKQDI
IKMFYPLVKVRYENDKYLIPFASLDAN.QRMEFDLKDPQGKVILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHLAE
PVMVGKEVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIQSFSADSESLKLLKQTEKIDDENALAAIRIHKV
MKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNHKLGLHVPDY.................................
...............ITTLTHEDIITTVKYLMKIKNN......................................QGKID
DRDHLGNRRIRAVGELLANELHSGLVKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPL
SEVTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGFIEAPYKKVVDGKVVG
ETI...YLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEG.EIVLNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDAN
RALMGTNMQRQAVPLLRSDAPIVGTGIEKIIARDSWGAIKANRAGVVEKIDSKNIYILGESKEE..........AYIDAY
SLQKNLRTNQNTSFNQVPIVKVGDKVGAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSECITKDDIFTST
HIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMILVGKTSPKGEIKSTPEERLLRAIFGDKAG
HVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDARVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHN
GKDYKEGDQIPKEEIASINR....FTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNGVIKK
VKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQILEMHLGLVGKEFGKQIA
RMLEDKTKDFAKELRAKMLEIANAINEKDPLTIHALENCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIA
MD........GKMDLYDGRTGEKMRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWA
LEAYGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINI