HMM Seed Alignment: TIGR03664

Download Alignment

>RF|YP_001824686.1|182436967/3-220
VLVVTAVPVERDAV---------TRAFGGA------PEAVALPGGEL------------------HRRGAFDVLAGGAGP
AAAAAATAFALASASA-----PYGLVVSAGIGGAFTPLT-PLG--SLVVASDLVAADLGADT------------------
----------------------PDG-FLPVTALGF---------GRDRFTAPPALVREV---------AGAAGATAGPVL
TVSTVTGTAERAADLLAA--------HPGALAEAMEGFGVAEAAARA-GLPVMELRAVSNAVGPRDRDAWRIGDALAALT
DAFGKTA
>RF|YP_001535420.1|159036167/4-215
VLVVTAVPAEAEAV---------RAGRGPT----------------------------------------VTVAPVGVGP
AVAGAATARLLALAEAAG--HPYRVVVSAGVAGGFPGQV-QVG--GTVVGTSAIAADLGADS------------------
----------------------PTG-FIPVDQLGMPAELLGGGTT---IIADPTLVAAL--------RAALPSAVAGPVL
TVGTVTGTVAGTDALLHR--------HPDAVAEAMEGHGVAVAAAHA-GLPFVELRTISNPVGPRDRNAWRLREALTALT
QAAAALP
>RF|YP_001716454.1|169830472/3-209
ILVVVAVPAEKEAV---------WRGLKGD--------------------------------------GRFDVVAAGVGP
VAAAANTAKALAAA-------GYGLAVSAGIGGGFPGRA-EVG--SLVVANEIIAADLGVET------------------
----------------------PEG-FASLDELGF------GSTR---IQVDVNLVNAV----AEALRTAELPVTTGPVL
TVSTVTGTAESAAELAAR--------VPRATAEAMEGYGVAFAAQER-GVPVLELRAISNLVGPRDRTAWRINEALGVLE
AACAVLL
>GB|EDS53205.1|169006355/7-216
ILVMTAVAVERDAV---------LRGLNGD--------------------------------------DRFEVMEAGVGP
VEAAVSTATVLALASP----DAYRLVISAGIAGGFKERA-EVG--TLVVSNAIIAADLGAET------------------
----------------------PEG-FHSVDKLGF------GSAH---IDVDGELAERL----TSALQAAGLQTALGPVL
TLSTVTGSAETAAGLAER--------IPGAAAEAMEGFGVAAAARRA-GLPVLELRAISNPVGPRDRSAWRIKDALQSLE
AASSVLR
>RF|ZP_02327512.1|167462423/24-230
ILVMTAVEAEREAV---------LQGLQDT--------------------------------------KGFDVILAGVGP
AMAAARTAKALSSG-------NYKLVISAGIGGGFPGKA-GIG--DIVIAGEIIAADLGAET------------------
----------------------QEG-FSILEELGF------GSSC---IQTNDMLVSRI----AETFNGAGLPVHIGPVL
TVSTATGTSDSALALAAR--------IEGAAAEAMEGYGVAAAAQDQ-GVPVLEIRSVSNMVGPRDKSAWRIKEALAALS
SASSVLR
>RF|NP_243556.1|15615253/39-245
VLIATSVTAEQKAI---------QAGLGRD--------------------------------------AQVDVMTIGVGP
MSAAAYTAKALASK-------DYDLVISMGIAGGFKGKA-AVE--SLVVADALIAADLGAES------------------
----------------------SDG-FLPLDDLGF------GSIYL--RP-DQEMVEQV----VSTLFAAYPFVHQGAIL
TRATVTGTEQTASRLIKR--------YPDAVAEAMEGFGVGTAAKAF-GVPFLEIRSISNEVGPRNREAWKLKESLSLLT
KVSSVLW
>RF|YP_483496.1|86743096/54-343
TLIVTAVTAEADAV---------CAGLMGSWSSGRTRTPVGPGSLVSPEWDRQLLTTSTLGPYVGRRRGPVTVLAAGTGG
PAAAAGTAVALSVASAAG--QPFSLVVAMGIGGGFRGWA-EIG--DIVLADRIVAADLGAESGLDEEPPAPPIGRISEMD
RNLGFHSNGAPAPRGGLAHSSNPAGSFLSLEDLGL------GSSTV--VP-DPDLVHRL----GTVLDVTGRRIVTGSVI
SVSTVTGTERRATALTER--------L-DPVAESMEGYAVGVAARAF-GVPVVEIRTISNTVGRRDRSGWNLPVALASLR
TAAAALV
>RF|YP_871868.1|117927317/5-223
RLIITAVAAEADAV---------ASGLDGA-------QPHPQGSANV------------------RHTATADILVAGVGS
AAAAAATAAALARR-------HYSLVICTGIAGGIGIAG--IG--DIVVADAVHPADLGAMS------------------
----------------------PDG-FIPLEHLGIATTA---------NAIDPPVVEEL----TGPLRYAGLAPVIGGIL
TVNTVTGTDAHADDLRRR--------YPGAVAEAMEGYGVAVAATRA-GVRYGELRVVSNRVGRRDRRAWDIPGALRRLE
HAFAALG
>RF|YP_174488.1|56962762/7-210
ILIVVSVEPEKQAV---------LQGLGNS--------------------------------------SAYEVLVGGVGM
AQAAARTARQLAQK-------HYQGTINMGIAGGFPGKA-ANG--TVAVATSIIAPEIGAES------------------
----------------------PEG-FLTIDALGF------GTQTLPAVANDSYIGKLQ----------EAVSVATGTIL
SVMTVTGTEATLNVRQSY--------GKDVVAEAMEGFGVASAAAEF-GLPFAEVRSISNQVGIRDKASWEFASAFSSLT
KAAEKLK
>GB|EDP81780.1|160355124/4-210
ILIVTSVDKERQAV---------EAGLKGD--------------------------------------PRFLTGLCGVGP
VEAAVRTMKLLSTCSS-----SVEAVLNLGVAGGIPGKA-AVG--EAVLGTKTVQADLGFEQ------------------
----------------------ADGSFEAIEALGFTVSERDA---------NSDLISRV-------REALRENVHEGPIV
TQSTVTGTKASLETLLQR--------VPDAMAEGMEGFAVHSAAEAY-GIPALELRAISNPVGPRKRGEWQLEDALHTLT
GLTVQLK
>GB|EDM34130.1|149228728/3-207
LLIVAATAPEINLL---------IQHFDLP-------------DADF------------------IETADFDVLITGVGM
TATAFALGRYLNQ--------SYDLVLNLGIAGSFDFSL-PLG--GLVNIVSDTFSELGAED------------------
----------------------HDR-FLPIETLGF------GKSSYHSTGGPVTAILDE------------LPRVKG--I
TVNKVHGNADSIRQAVTS--------F-QPVAESMEGAAVFYAAAQL-QIPAIQVRSISNYVEPRNRERWQIGPAIASLN
LWAIRFL
>RF|YP_143822.1|55980525/2-214
WLLLSPTRLEAPFLEGEPFAFLAWRGLKGT---------------------------------------GFVYLETGIGK
VNAAMALAAYAARN-------PVEKALLFGLAGAYPGGP-SLG--EAVLVEEEVEADLGL--------------------
----------------------KEG----LAPLGFPALALGERRYFNRFPLDPGLTGEL-------ARGLGLKVAVG--L
TRDLVSETPEEALALARR--------W-GASLENMEGAAFARACLAL-GVRGAELRALSNPAGVRDKAHWRTKEALSALA
RAVRRLL
>RF|YP_603919.1|94984555/3-206
VLIVVATAGEAARL----------ADLPAR------------------------------------------VEVSGVGP
VAAALATQRALARE-------PFDLAVSAGIGGAYPGSGLEPG--DLAVSRVIVQADLGAQD------------------
----------------------GEH-FLDLAALGLSVLPGAAQTGTFAAWDGAAPLAAA------------LGAACGPTL
TLSTVTGTAERAAELAQR--------YPGALTEGMEGAGVAHAALVA-GVAALELRGVSNLVGPRDRRSWRIPEALAATR
RGLEVLL
>RF|YP_902924.1|118581674/4-236
VLIITAVRQEAKLL---------EKALVAA--S-RVNTPAFATVNGM------------------LGGIAVVICVAGVGK
INAAAATAALIERH-------KPRLVINTGCAGAYPGSGLAIG--DLAVASVEILGDEGALT------------------
----------------------SLG-WLGLREMKLPYLVQGTRRYYNEIPLSCHISEKA----VQLADYCGIGLARGRFV
TVSTCSGTTLKGEELVHR--------F-GALAENMEGGAVALVCLRY-GVDCLEIRGISNLVEERNLENWDISRAVEAAQ
RFVLKYL
>RF|ZP_01593795.1|118745831/4-237
ILILSAVPCELELL---------LNALEEP--Y-CDPDAVFSATEGN------------------IGATRLVCCAGGIGK
ANAASAATSLVERY-------HPQLIINIGCGGAYPGSGLSVG--DLAVASDEIFGDEGVLT------------------
----------------------PAG-WMDMKQVGLPLFSEGERAWYNSIPLARHEAQKA----MQLADSHGLQLVRGRFV
TVSSCSGTKARGLELARR--------Y-QAVCENMEGAAIALTALRYGGIPCLEIRGISNLVEDRDMARWDIGRAVEAAQ
RFVIKVI
>RF|YP_001229470.1|148262764/4-236
VFVTASTIQELSML---------VRVIGAR--Q-RADAGLREVYDGR------------------IGKRDIIIAVTGMGK
VNAASAITALLEHV-------SPQILINTGCCGAYRGSSLTPG--DLAVATAEIFADEGVLT------------------
----------------------STG-WRPLDFIGIPFVVRNGKSFFNEFPLSVQAAEKA----VHLAAALGLSIKRGKFL
TVSTCSGTTGRGDELYRR--------F-GGICENMEGAAAAQIALRY-GVDCLEIRGISNMVEDRDLSRWDIPRAVEAAQ
RFLLKYI
>RF|YP_386318.1|78224571/4-237
IIIAAATSLELSLL---------VRSIGAR--EVRRKKGFSDTYRGK------------------VGGTTVLLAVTGIGK
ANTASALTALLERY-------TPRLLIDTGCAGAYGGGGLAVG--DLAVASTEVYGDEGILT------------------
----------------------PSG-WESLEIIGIPQLERGGRRFFNEFPLALLPAERA----VQLGAALGVPVRRGRFV
TVSTCSGTTARGNALARR--------F-NAICENMEGAVAAHLALRY-GIDCLELRGISNMVEDRDLSGWNIPLAVERAQ
RFILKFL
>GB|EDJ77813.1|144942694/4-236
VIVTASTTLELSEL---------IAGTSAI--A-VTGVGHLRVYRAS------------------YRGVELVIAVTGIGK
VNAAAATTLLLERF-------GAELLINTGCGGAFPGCGLGVG--DLAIAQSETLADEGVQT------------------
----------------------PDG-WRGLELIGIPVFQGDGKRIFNTVPLDLDLARGA----EAHARELGYAVAGGPFL
TVSTCSGSALQGQELLRR--------FPG-VCENMEGGAVAQVALPY-AVPLLEVRGISNLVEDRDLARWDLKLAVSQAQ
KFLLDYL
>NTL01PC3116/2-238
IAIVAAVPDETWML---------RRRLFPC--E-VKRCGHRDLYCGS------------------MFGHKVIVLHTGVGK
INAASAVTALLEHC-------EPASVIVTGCCGAYPGQGLARG--DLVLASEEICADEGVLT------------------
----------------------PDG-FQDFQTLGFSLLRSKGIGMRNRFSVDTKLQEIARSHLDRFARESGFELGIGPLV
TVSTCSGTLQSGQAMQKR--------T-GGLAENMEGAAVAQVCGQY-NVPFLEIRGVSNMVEDRNLANWDLDGAAERAQ
QALMTLL
>GB|EAT02127.1|93451224/12-231
LLLITATEMEMAPL---------RQALAAA-----------------------------------GEMAGIDLLVCGVGP
TAAAATVAAHLAGQGAGAGNRPCSGVILSGVGGLYPATAQAPGLLTFCLAEKEILGDFGLAA------------------
----------------------PHG----AEPFGNPELDAQRE-----FPLASLLLEQA----AAGVADLRLPCQRGIFL
TLNAASTTGSRGQALAER--------Y-QAVCENMEGAAVALVCHRH-RLPLVELRCISNLVEDRDLSRWLLGPAVRRQA
EVMALLL
>RF|YP_389677.1|78358228/19-252
LIITTATTREMEAV---------LKGFNGRGRVGCVLPRQGEVCASP------------------VNERQCLLAVTGVGP
VNAAFTLGRLLGEHR------NIDGVISLGIAGTFDPDAAPLG--STVLATRETWADYGLYT------------------
----------------------AQG-VDPM-GIGFGQTDDAVNPVWNSIELNPAPALAV------LQLTPPPLCRTGGSL
TVAAASGTAERACAMRQT--------H-HALTENMEGFALALGCLRQ-GVPFLELRTVSNVVGSRAAHDWAVDDAFASLG
QAARALF
>RF|YP_965660.1|120601260/3-235
LILATATTSEMRAV---------LTGFNGRGRVGCVMPEEGQPVVSP------------------VNECECILLVTGVGP
VNAAFQLGRTLAANK------RIEGVVNLGIGGSFDMEKAPLC--HGVLVDSETWPDYGLAT------------------
----------------------TEG--TSAEALRFPLHQDDAGTVWNRI--DLAPVASL----HTLGLSVPEHSAIGGAL
TVAAASGHPARAEEMCAH----------GALIENMEGFALALGCRKA-GLPFVEYRIVSNRVGSRAAVDWALDDAFTALG
KAARALF
>NTL02PS0559/7-232
TLLLIPTSGERSEL---------LNHLDLS----------------A------------------VSMKGWTCELCGFGL
VASAAATMRAIQSQ-------QPARVILAGIAGGLSDAA-SVG--SAHWFDQVICDGIGVGE------------------
----------------------GEQ-FASAESLGWQQWPGTDEALVPAVGDRIDLSRPK------NLSGEDLPEARSEAN
TLISVCAASSDGVMASRRGSLASTNDHDGVIAEDMEAFGVAMACRMT-STPCMVVRGISNAAGDRDHSRWQITASLRSVA
DRLMQLN