HMM Seed Alignment: TIGR03670
Download Alignment>RF|NP_148216.1|14601675/553-1158
VFINGRPLGYHPNGAELARKIRELRRSDKLEVERPWEVSVYHLREGEI--------DELYVNTDSGRLMRPVVVVENGEP
KLTREHVEKLSRGEITFWDLVKQGVVEMLDPEEEQNALIAELPWE-----------------------------------
--------VTKEHTHMELWVPAIVGVAAATIGYLEHNQSPRNTYQAAMAKQALGVYALNYRIRLDSHSYLLQYPQVPIVQ
TRMLDIMGYNERPAGQNMVVAIMSYTGYNIEDALIFNKGSIDMGLARAYFFRVYTGIENEYPGGERDRITLP--KPDEVY
DYRGAAAYAKLEA-DGIVAPETEVEGGEILIGRVSPPRFLG--EGRVIS-MATVRRRDTSIPMRLGEKGVVDMVVISTTV
ERNKLVKVRVRNLRIPEIGDKFASRHGQKGVIGMIFPRYDMPYTEEGIEPDVILNPHAIPSRMTVGQLLEEIAGKLGAIK
GRFVDATPFFKED-I--DGLRIELLKEGYDPNAREVMYDGRTGQIIEAPITIGVAYYQRLYHMVADKIHARATGRVHLLT
RQPTEGKARQGGLRFGEMERDCLVGHGASMLLRDRMLDNSDAYVMYVCNT--CGNIAWFNRRKKVLECPIHGEEGDIR--
----PVKVPYAFKLLLQEITSMMIKPELKVADKI
>RF|YP_001013739.1|124028419/534-1134
VFLNGRLIGYHPDGEKLAEELRKLRRSGKL----HYEVSVSVYRTETI--------NEVYINTDPGRIMRPVFVVESGKL
LYRPEHAEKLRKGEWRFSDLVRNGIVEFLDAEEEENTYIALNPED-----------------------------------
--------LTPEHTHMEIWPAGIFGVTASTIPYAEHNQSPRNTYQAAMAKQALGLYAANFQIRVDTRSHLLHYPEKPLVQ
TRALELMGYNDRPAGQNMVVAVMSFTGYNIEDAVIMNKSSIDRGLARSTFFRLYATEERRYPGGLSDKIEIP--EAN-VE
GSKPPEMYKKLDA-DGIISPEVEVKGGEVLIGKTSPPRFME--EYREFG-TVTVRKRDTSVTMRHGEKGVVDTVIITENI
EGYKLVKVRVRDQRIPELGDKFASRHGQKGVIGMLIPQYDMPFTEDGITPDLIINPHAFPSRMTLGQLFETIAGKYAAIY
ARFVDGTPFAKES-I--ENLRIELLKTGYAPDGTEIMYDGRTGEMIRTPILIGLVYYQKLHHMVADKIHARARGPVQVLT
RQPTEGRAREGGLRFGEMERDCLVGHGAAMLLRERMLESSDRYVLYVCEL--CGHIAWFDRNKRGYICPVHGDKGKIA--
----AVIVPYAFKLLLQELMSMCIMPRLKLASKH
>SP|P11513|RPOB_SULAC/518-1118
VYLNGRLLGYYEDGKELAKKIRESRRQGKL----SDEVNVAYIATDYL--------NEVHINCDAGRVRRPLIIVNNGTP
LVDTEDIKKLKNGEITFDDLVKQGKIEFIDAEEEENAYVALNPQD-----------------------------------
--------LTPDHTHLEIWPSAILGIIASIIPYPEHNQSPRNTYQSAMAKQSLGLYASNYQIRTDTRAHLLHYPQMPLVQ
TRMLGVIGYNDRPAGANAILAIMSYTGYNMEDSIIMNKSSIERGMYRSTFFRLYSTEEVKYPGGQEDKIVTP--EAG-VK
GYKGKDYYRLLED-NGVVSPEVEVKGGDVLIGKVSPPRFLQ--EFKEL--SPEQAKRDTSIVTRHGENGIVDLVLITETL
EGNKLVKVRVRDLRIPEIGDKFATRHGQKGVVGILIDQVDMPYTAKGIVPDIILNPHALPSRMTIGQIMEAIGGKYAALS
GKPVDATPFLETPKL--QEMQKEILKLGHLPDSTEVVYDGRTGQKLKSRILFGIVYYQKLHHMVADKMHARARGPVQILT
RQPTEGRAREGGLRFGEMERDCLIGFGTAMLIKDRLLDNSDKAVVYICDQ--CGYVGWYDRSKNRYVCPVHGDKSVLH--
----PVTVSYAFKLLIQELMSMVISPRLILGEKV
>RF|NP_558752.1|18312085/531-1126
VYLNGRLIGVHPNPEELAKTVRGLRRQGKI----SDEINIAVIN------------GTVYVNCDGGRIRRPLLVVENGKL
KLTREIVEKVKRGDLTWDDLVKMGVVEYLDADEEENAHIATDPRG-----------------------------------
--------NLTNYTHVEIIPSSILGAIASIIPYIEHNQSPRNQYEAAMAKQSLGLPQSNFLYKLDSRGHMLYYPERPIVT
TRGLELIGYSKRPAGQNAVVALLTYTGYNIEDAVILNKASVERGMFRSVFYRTYETEEQKYPGGEEDRIEIP--DSS-VK
GYRGPEAYSHLDE-DGIAPPEVYVSSNEVLIGKTSPPRFYT--TLEAE--RILKERRDASVAVRRGEKGIVDKVIITESP
EGNKLVKVRLRELRVPELGDKFASRHGQKGVVGMLLRQEDMPFTEDGIVPDIIVNPHALPSRMTVAQLLESIAGKLGAST
GQLIDATPFEGVK-E--EDLRKLLLKLGYKWDGKEVMYSGITGERLVADIFIGIVYYQKLHHMVADKIHARARGPVQILT
RQPTEGRSREGGLRLGEMERDVLIAHGASALLHERLVESSDKYVMYVCEL--CGLPAYLDAKSNKPKCPIHGDTGQFA--
----KVVVPYAFKLLLQELIALGIYPKLELSEVL
>RF|YP_919699.1|119719204/518-1128
VYLNGRLIGYVEDGKGLAETLRKLRREGRI----SHEVNVAFYSHEYTVGGVKGRIEEVYVNCDAGRIRRPLIVVENGEP
RLKHEHVELLRKGEWTWSDLIENGIVEYLDAEEEENAYIATDVSE-----------------------------------
--------LTPQHTHLEIVPAAILGIIAMTIPFIEYNQSPRNSYQAAMAKQSLGIPHYNFKLRMDPRMHVMYYPQKPLVK
TRIFDLLPLDNLPYGTNMVVAVLTGGGYNIQDAVVINKAAIERGMSRSVFFRTYEAEERRYPGGLEDRFEKPSLEKD-LL
DVKPPQAYEAIDPVDGIAYVEAELYGGQAVVSRTSPPRFYT--STLEP--RVMTKRKDTSLLLRHGEKGIIDRVFIMESP
GGIKLAKVRVRDLRPTELGDKFASRHGQKGVVGMLVPQEDMPFTEEGITPDLIINPHAIPSRMTVGQLLEAITGKAAALA
GRRIDATAFEPPS-L--DEIREILRSYGFRSDGKEVLYDGVTGEKLEAEIFIGVVYYEKLHHLVADKMHARARGRVQILT
RQPTEGRAREGGLRFGEMEKDCLVGHGASMLLRERLLESSDKTTIWVCEN--CGYMGWFDARKNTPVCPVCGDKGRLS--
----PVEVSYAFKLLLQELTGLGLSVRLILKDKI
>RF|YP_136946.1|55379096/9-608
VYVNGSLVGTHPDPEQLAEQVRQARRRGDV----SQMVNVSVKNR--T--------GEVIINADAGRARRPLLVVEDGEP
LMTDEEVEQVKEGELEFEELVERGLVEFIDAEEEEDILVGVDEGE-----------------------------------
--------LTDNHTHLEVDPQLMFGIGAGMIPYPEHNASPRITMGSGMIKQSLGLPSANYRIRPDTRQHLLHYPQLSMVK
TQTTEQIGYDDRPAAQNFVVAVMSYEGFNIEDALVMNQGSVDRALARSHFFRTYEGEERRYPGGQEDRFEIP--DDE-VR
GARGEEAYTHLDD-DGLVNPETKVGENAVLLGKTSPPRFLE--EPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGE
DGSKLSKVSVRDERIPELGDKFASRHGQKGVVGHIAPQEDMPFTEEGVVPDLIINPHALPSRMTVGHILEMIGGKVGALE
GRRVDGTAFTGED-E--DELRGSLEEHGFDSSGKETMYSGVTGEKIDAEIFVGDIFYQKLYHMVSNKLHARSRGPVQVLT
RQPTEGRAREGGLRVGEMERDVLIGHGAAMALKERLLDESDREWINVCGQ--CGMTAVENVEQRRIYCPNCEEETDIH--
----EVEMSYAFKLLLDEMKALGIAPRIELEDAV
>RF|YP_307136.1|73671121/6-604
VFINGELVGTHDNPAELVDELRKMRRQGFI----SRQVNVALNSN--T--------REVIINSDMGRARRPLIVVENGAP
RVTEEHVEKIKNKEITFDDLVKEGCIEYLDAEEEENAYIALYEAD-----------------------------------
--------LNSKHTHMEIDPELILGISTGMVPYPEHNASPRNTMGAAMIKQCIGVATANQKLRPDTRAHVLHYPQRAMTR
TRTSEAIGFDDRPAGQNFVVAILSYEGYNIEDALIFNKGSIERGLGRSHFLRTFEGEERRYPGGQEDKFEIP--DSE-YR
GARSAEAYANLDT-DGLVNPETPVGPNDVLIGKTSPPRFLE--EPSDFG-ISVEQRRESSITMRSNETGIVDTVILTESI
NGTRLAKVKVRDERIPDIGDKFASRHGQKGVIGLKVPIADMPFTESGLTPDLMINPHAIPSRMTVGHVLEMIGGKVGSME
GRRVNATAFSGEN-E--EDLREALKRHGFAHTGKEVFYDGATGKMIPADVFVGVILYQKLHHMVTSKMHARSRGPVQVLT
RQPTEGRAREGGLRFGEMERDVLVGHGAAMSLKERLLDESDKVVELVCSH--CGMIATYDKQRNVAFCSTCGADTDIY--
----PVEMSYAFKLLLDEIKSLGVAPRLKLEDAV
>RF|YP_023037.1|48477331/552-1194
IYLNGDFIGYHNDPIAFVNTVRDLRRAGRI----SQELNIRYDNK--T--------NEVIMNCDRGRLRRPLLIVNDGKT
VLNRDMVEKLKMGDYTIEDLVNLGAIEWLDAEEEENSYIAVYPFSYPERCPNCNSILYRDMVTWVNPGEDNIVLECDKCH
AHFDGKSLLTSEHTHCEIDPSMILGVVASLIPYPEHNSSPRITMASAMTKQSIGLPAANYRIRVDTRGHLLHYPQVPLVK
TKVMDFIKYNNKPAGQNFVVAIVSYQGYNIQDAIVMNKASIERGLGRSAFFRTYTAEEIRYPGGQEDRFEIP--THD-VL
GARAEEYYKNLDE-SGIIYPESEVNGSDVLVGKTSPPRFLE--ENADK--LGPMRRRESSVTMRPNESGYVDNVFLTVSE
SNSRIVKVKVRMDRTPQPGDKFASRHGQKGVIGAVVPQEDMPFTEDGIIPDLLFNPHSVPSRMTLGHVLEMMGAKVSTAT
GENIDSTIFDGEP-E--KSLREELKKYGFSESGEEVMYDGITGRKFKARIFIGVIYYQKLHHMVANKFHARSRGPVQILT
RQPTEGRSRQGGLRFGEMERDTLIAHGASMVIKDRLLDQSDGTILYVCGNPSCGHIAIYDFKRGTLKCPVCGNTGNIY--
----PIETSYAFKLMRDELSSLGIIMRLELGDMR
>RF|YP_448393.1|84490161/6-603
VYINGKLIGTTDEPEAFVKEVKARRRSNEL----THELNITYYEE--N--------SEIFIFTDPGRARRPLVIVENGVS
KLTDEIIDQVAAGELKWFDLIHKGIIEYIDAEEEENAYIAMFEDQ-----------------------------------
--------LTEDHTHLEIDPSTMLGICAGIIPYANHNSSPRNTMEAGMTKQALGLYVSNYNLRTDTRAHLLHQPQMPVVK
TKSMVSTEYDKRPSGQNFVVAILSYQGCNMEDALVMNKAALERGLGRSSFFRSYEASERRYPGGQEDHFEYP--ESM-VR
GYRSEEVYKHLDE-DGLINPEVPVTSGDVLIGKTSPPRFLE--DVDEFG-TVAERRRETSVTVRHGEHGIVDKVMLTETV
EGSKLAKVKVRDHRQPEYGDKFASRHGQKGVLGLIVPQENMPFNENGMCPDLMINPHAIPSRMSIGQIIEMLAGKAGCME
GHRIDGTPFTGVP-E--DEIKRLLKENGFETHGREQLYNGITGERFKAEIFVGVAYYQKLHHMTSDKVYARSRGPVQVLT
RQPTEGRAREGGLRFGEMERDCLIAHGAALALKERLLDESDKYEALLCGN--CGRLAVRDKIRDRTYCAICGETETF---
----PIEISYAFKLLLDELKSLCISPNLVLEDKA
>SP|Q60181|RPOB1_METJA/11-615
IYVNGKLVGTTDKPEELVNFIREKRRKGEL----PQYTTVAYNEE--S--------NDIHINTDAGRIVRPLIVVENGKP
KLTKEHIEKLKKGEITFSDLVKEGVIEYLDAEEEENAYIALSEEE-----------------------------------
--------LTEKHTHLEIDPLTILGIGAGVAPYPEHNSAPRITMAAAMGKQSLGIPMSNIKWRLDTRGHYLHYPQVPIVR
TKHQEILGFDKRPAGQNFVVAIMSYEGYNMEDAIVFNKSAIDRGLGRSTFFRTYDACERRYPGGQMDRFEIP--DKG-VR
GYRSEECYRYLEE-DGIVAVESHVKGGDVIVGKTSPPRFLE--EHEITI-QVKPQRRDSSVVVRHGEEGYIDKVILTETK
EGNRLVKVKVRDLRIPELGDKFASRHGQKGVMGLTVPQEDLPFTESGIVPDIIINPHAIPSRMTVGQLLEMLGGKVGALE
GRRIDGTIFSGEK-E--WDLRKALEALGFKHHGKEVMYDGKTGKKFEVEIYIGIAYYQKLHHLVAGKIHARSRGPVQVLT
RQPTEGRAREGGLRFGEMERDVLIGHGAAMLLKERLMDESDPYDICICSK--CGDFAILDYKRGLKYCPICGEIENLYSS
KKIPFVRIPYAFKLLLDELKSMCILPRIKVRDKV
>RF|NP_126305.1|14520830/519-1117
VYLNGVIIGTIEDGKALVERIKKDRRSGKI----SDIINVAYYED--V--------REVYVNSDDGRVRRPLIIVENGKP
KLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAEEEENAYVAMWPWE-----------------------------------
--------VTEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVN
SRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIP--SPT-VR
GYRGEKYYRHLDE-DGLIFPESKVEGKDVLIGRTSPPRFLE--ERG-LGAVSLQERRETSVAVRPSERGVVDKVIITETG
DGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGKVAALK
GRRVDGTAFIGEP-E--EKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADKIHARSRGPVQVLT
KQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCEN--CGHIALEDKRRHKVYCPVCGEEERIS--
----KVEMSYAFKLLLDELKAMVIRPKLNLTERV
>RF|NP_613971.1|20094124/25-632
VYLNGRLIGYVEDPEEFVEKVRELRREGVL----HPRVNAAYHED--L--------NEVHVNCDRGRVVRPLLVVEDGEV
KLTEEHLEKLREGEISWKDLEEEGVIEFLDAEEEENALIAQSLEE-----------------------------------
-FYSMPKEERKKYTHVELDPAAIFGTCCSCIPWPESNSAPRNTMGTNMTRQALGFYAANHPIRMESRGHLLYYPHRPLVK
TRGTEAFDYDERPAGQNMIVAVLTYEGYNMEDAIIMNESAIERGLARSFFFKTFEDEARTYPGGMKDKFCIP--EKE-VR
GYRSEDAYKHLGE-DGLAEVGERVEGRDVIIGKTSPPRFLE--EFRPEE-LPAEERRESSTAIRHTDSGIVDSVIITETS
DGHKLVKVRIRDERVPELGDKFSSRHGQKGVIGMIVPEEDMPFTEDGITPDLILNPHALPSRETMAHILETLAGKAAALS
GKRIDGSAFTSNPKEAYEEIKKMLRELGFEPTGKEVMYDGRTGQKLEAEVFIGVCLYRKLYHMVKDKYHARSRGPVQVLT
RQPTEGRAREGGLRFGEMERDDLVAWGASLFLKERLLDESDKYEAYICPN--CGELCYVHAATGKTICPICGEVRAD---
----RVEMSYAFKILLDELKSFCMDAVLEVGSLS
>RF|NP_963450.1|41614952/5-602
IYLNGKYIGKTDNPEKFVQEFRKKRRLGYL----PETVNIYLDEQ-----------NDIYIYTDGGRIVRPLIVVENGKP
KLTQKHIELLAQGKLKWDDLVKQGIIEYLDAAEEENAYIALDIED-----------------------------------
--------LTPEHTHLEIGPQVILGILSAAVPYARFNQSARLNRGERTQRQALGLYSVAYPLRFESDVHVAQTLQKPLVR
TIVHDLIRFDERPAGYNMVVAVMAYEGYNTQDALVINRNAIDFGFTRTMYFRPYEAVERKYALGLSDEITVP--SPD-VR
GYKGEKHYRHLES-DGIVYPEAEVKGKDVLIGRISPPRFLEGGELALLG-AATLQKRDSSITVRSEEEGIVDSVLVTEGE
DSNLKVRVRIRMERPTEIGDKFSSRHGQKGVIGLIVPPSDMPFTASGIVPDLIFNPHGLPSRMTIGQIIELVAGKVASLR
GKAVDGTPWEEEP-V--EDLRKQLLRLGFREDGTETMYDPITGEEYKVKIFVGVMWYHKLKFLAANKLHARARGPMAILT
RQPTEGKSREGGLRFGEMETDVILSHGAAISLYERF--GSDLVKVPVCEK--CGAIAIENKEKGTAYCPVCGETEKIS--
----YVEMSYAFKLFLDELTSLGIWPRLRLKHKF