HMM Seed Alignment: TIGR03828
Download Alignment>NTL01TT2394_T.tengc/8-312
ITTVTANPAIDRTVIVENLRL-GSVNRVIRSRVDAGGKGINVAKNLKNLGDEVITLGFLGP-NAQYIIDCLEEEGIKSDF
VKIK-NDTRTNIKISDISRGEVTDLNEYGPEVS-EEEIELLKESIFRYA-EKSK--VLVLSGSLPLGVPKTFYKEIIKEV
KNK----DLKIILDADNQALF-YGIEER----PFMIKPNLHELEDIVG------RKL-E-TLEE----IIEEGKKLNKKG
IEIVAISMGKEGSVVITDD-AVFRVKP--LKVE-VKGTVGAGDAYVAGFAHGIYRGLSLE--ETIKIAAALSTSVVMKEG
TGAGTIEEVNA----LKDKIEIE
>NTL01LS1046_L.sakei/2-302
IYTITANPSIDYVIQLEKLNT-GNVNRVQSDVKLPGGKGINVSRILAELALPSVALGFVGGFTGQFIQNKLNNASIDCRF
TEVE-EDTRINVKLKD--SVEETEINGQGPHIS-AGTVDNLKQQLA-KL-EAGD--IVFMSGSLPPNLPASFYKDLIPMI
QAH----NAEFVIDTTGQALL-DTLAEK----PLVIKPNHHELAELFD------TQF-A-NQGE----IIAAGRKLLDKG
AQHVLVSMAGDGALLITPD-HAYLGGT--PKGT-VINSVGAGDSMIAGFVGTFAQHHDAL--AAFKTSLACGSATAFSED
--LATSAKINE----LLPQIEIT
>NTL01GK1839_G.kaust/2-301
IYTCTLNPSVDYIVHLDELHV-GELNRSVKTFTFPGGKGINVSRVLKRLGVDSTALGFVGGFTGGFIESELRKEGIACDF
VHVP-GQTRINVKLK---AGRETEINGEGPMIA-DDDATQLIAKIG-AL-SAGD--VLVLAGSAPMSLSVDVYEQLAARA
VKR----RVRLVVDTSGPALE-ALLAYR----PFLAKPNHHELAELFG------AAV-L-TKEE----IIPYGRRLVERG
VEHLIVSMGGAGAFYFGRE-ATLFAEA--PQGT-VKNSVGAGDSMVAGFLAAWASGTSIE--EAFAYSVAAGSATAFSED
--LCTKEEVEA----LVDRVRVA
>NTL01SH2195_S.haemo/2-301
IYTVTFNPSIDYIMFTNGFEI-KGLNRATSTYKFAGGKGINVSRVLKTLGVPSTALGFAGGFPGEFIAQTLEESQIKTDF
IKVD-EDTRINVKLK---SGDETEINAPGPSIT-DDQFQALLNQIK-QT-TKED--TVIVAGSVPKSIPSDAYAQIAEIT
QST----GAKLVVDAEKDLVN-TVLKYQ----PLFIKPNKDELEEMFD------MTV-E-SDQD----VVKYGREILKEG
AQSVIISLGGDGAIYIDKT-RSIKAQN--PKGQ-VVNTVGSGDSTVAGMVAGLESGLSLE--DAFQQAVASGTATAFTED
--LATIEDIEK----IKSQVTIT
>NTL07ST0794_S.therm/4-309
ITTVALNPAIDRTLVVPGFTA-GATNRVASTRVDPGGKGINVARAAQALGAPVQVLGFLGETNAELILNSLSHEQVVHDF
LMVP-GETRVNLKIVEPQSGQLTELNESGFAVA-PEQVDALVRRVEQRL-PETA--VLVLAGSLPAGVPGTIYRDLIALA
RQA----GVPTILDADGEPMR-IALAAR----PTLIKPNRDEAERLVG------RRL-D-GPDA----LVQAARQLLHAG
PEVVVVSSGADGAGLVTAQ-EAWWATP--PGIR-PGSTVGAGDSMVAGLALALSGGLSLA--EALRLATAAGTATARLDG
TQVCTRDAVDA----VLPQVRIA
>NTL03MT0012_M.therm/2-306
IATITLNPAIDKSIIISKFTI-GKTNRARVDRIDPGGKGINVAKVLKQLGCQVITSGFLAGNNGRYIAAYLTEQEIMNDF
IVIP-GETRQNLKIVDPVKKTITEINEPGAEVD-ESYLKQLKDKVEELA-AQCQ--VIVFSGSLPPGLPDHTYKQLILLA
KER----GAQTILDTGGKALW-KGLEAC----PTLIKPNKQEVEELLQ------MEV---GGGR----LLDAADHLLALG
LDVVVISLGAEGALLASGN-QKLRAHP--PAVE-ANSTVGAGDAMVAVFAYGLERGLPLA--ETLRLATAVSAATAAAHG
SEVGDIELAKN----MLHEVKIQ
>NTL01CA0226_C.aceto/2-307
VITVTLNPAMDKTLNIDNFNV-GVVNRVSNIRYDIGGKGINVSKVLKNFNIESKCTGFIGGMWEKDFREELDKRGIKNEF
ITVS-GNTRTNTKIVDDLNKVYTDINEAGPSIS-SKELEMFMNKFKDMC-NKDD--IVVLSGGVAPGIPKNIYGTLTKIA
KEE----GSFVILDAEGELLS-EGIKEN----PYIIKPNDMEFELLLN------KKF-K-NNTD----IIDGAKEVIGLG
VSNVLISLGSKGALFVNKD-KSYYAKG--LVVP-VKSTVGAGDSMVAAFVYGIINSLNEK--EILRFSIACGAASVSTEG
TEACSLEDVKE----LLKSVVIE
>NTL03BL3353_B.liche/2-302
IYTCTMNTAVDLFVETDELLP-DVVNRTKDEDYQPNGKGVNISFMLKRLGLDNTALGFTGGFTGRFIENELLNEKIVTDF
VEVE-GISRINIFIN---STREFKIVNKGPLIS-EARKQELINKIR-QI-PPGR--FLFISGSLPRGVPDDMYLSLSEIA
AEN----KLKLILDISSPVLL-DCLSYH----PYLIKPNEQELAAFFS------RKK-ALSEEE----IIHCGKELLDRG
AERVLISRGKDGALYLDRQ-RTLKATA--AKGK-VVNTACAGDAMLAVFVGKQELGCSVP--EALRHASAAGSLTAFSKG
--LGDVSKLDQ----TASQIQIT
>NTL01DC1074_D.sp./2-307
IATVTLNPCLDKHIDVHGLVL-YETNRWHRMSKYAGGKGIDVSRAVYEMGFDTIACGLLGGEEGREIETLLTEQGLKYHF
TPIS-QPTRSCFIIYDTKTHRQTNLNAPGPRIA-PPELKMFYEDLLRES-AASS--LIVMSGSVPPGVPSSVYFTLISHA
RKL----GKQTILDTAGKYLR-EGLKAK----PCLVKPNIREAEELLG------RKL-E-TEAE----IILAAKEIVRMG
AGIEVISMGKKGLIACDGK-QVIKASS--AYVR-VKSTVGAGDSTVAGFAISLRRGDSLE--EACRLGVAMGTAAVMTPG
TELCHREDVQY----WLPRIKIR
>NTL03PA03561_P.aerug/4-308
ILTITLNPALDLTVRLRQLEL-GAVNRSEAVLTQAAGKGLNVAQVLADLGHRLTVSGFLGEDNQPPFTAMFQRRGFADAF
VRVP-GETRSNIKLAER-GGRVSDLNGPGPEAD-ERAQAALLERLDRLA-GEHE--LAVVAGSLPRGVEPEWLGELLRRL
RRL----GLKVAFDSSGAALR-EGVKAA----PWMIKPNVEELADLCS------APM-D-DLVA----QRQAAERLRHDG
VGQVVISQGAAGVNWFAAE-GAWQARP--PAVE-VASTVGAGDSLLAGMLHGLASGWPAE--RVLRQATAIASLAVTQFE
FGIGDPQRLAR----IEAGVVVQ
>NTL01AS1831_A.sp./4-307
ILTITLNPAIDVTIELNELRL-GEVNRQEHVQLHAAGKGLNVAQVLHDLGHTVIVSGFLGRENREIFDKHFHHMQFDNQF
IYID-GETRQNIKVAES-SGRMTDINGKGFIIS-EQNKTAFFAQIEACS-VDID--HVVIAGSLPQGFSIDDFKSLISLL
KKL----NKKIAIDTSGKALA-TAIAMN----PWLIKPNTDELEESFG------KNV-E-QFSA----QTELFKQL-DSQ
IEHVVISMGENGVNWLNSG-KALHAQP--PKMT-VKSTVGAGDSLLAGMLHGLVSNFTPE--ETLTTATAIASHAVSQVG
FRIPTQDKLAH----LKQQTTIK
>NTL06SP1275_S.pyoge/2-301
IYTVTLNPSIDFIVRIDQINL-GSVNRMASDDKFAGGKGINVSRILQRLDIASTATGFLGGFTGRFIEESLSAEGVKTDF
VKGD-QDTRINVKIK---SQEETELNGQGPIIS-REQLEELKTKLS-QL-TAED--TVVFAGSAPANLGNAVYKELLPLV
RQS----GAQVVCDFEGQTLI-DALAYN----PLLVKPNNHELEAIFG------TIL-T-SLDD----VETYARRLLEMG
AQNVIISMAGDGALLVTKE-ATYFAKP--IKGE-VKNSVGAGDSMVAGFTGEFMKSQNPI--EALKWGVACGTATAFSDD
--LATIAFIKE----TYHKVEVE
>NTL01FN2013_F.nucle/7-308
IYSVTLNPSIDFIVRVKDFQL-GETNRAYEDNFFAGGKGIMVSKLLKNVKTDCVNLGFLGGFTGTFIEQNLKKLNILSDF
VTVN-ENTRVNVKLK---TETETEINCQGPKIS-ENEKEEFLDKIR-KI-KSDD--FVILSGSVPSNLGNDFYITIIEIL
NKN----GANFTLDSSGETFS-KSLKYK----PFLIKPNKDELKEYAK------REF-K-NNQE----IIDYVRENLVDK
AEHVIISLGGEGALYIDKN-FSFFAQPLRVKEN-VVNTVGAGDSVVAGFISCILKHNEVE--KAFRFAVACGTATSFSED
--IGELNFIEE----IYNRLVIE
>NTL01LL0973_L.lacti/2-302
IYTVTLNPALDYFMNYEELAL-GEVNRTGKTQISAGGKGIMESRMLSLVGAKSKALGFLGGFSGQYIKDFLNENQIDSDF
TEIE-DLTRINVKLKS--QENETSLDAAGPKLQ-ESEINHFLEKFD-HL-KEDD--IVVFAGTIPKSLGEDFYERLIAKV
QKQ----KATFVMDVDGQKLL-DSLPAH----PLLIKPNREELEAIFE------TSF-K-NNEQ----IIPYGQKLLEMG
AQNVIVSMAGDGALLFTNE-KVYFAQG--IKGE-LKNSIGAGDSTVAGFLAEYSQSKDPL--LAFRQAIACGTSKAFSDD
--MPSRAFLEE----IYKKVNIS
>NTL01TF0696_T.fusca/2-309
ILTVTPNPSVDRTLEIDTYVR-GAVIRIHNAMAHAGGKGVNVSRALRNHGVQTVAVLPVGGAEGAQLTALLGEHGIAAVT
VPVA-AVTRCNITTAET-DGTTTQLNVPGASLS-EAEVAALLRAVESQLRHHPK--WLVAGGSLPQGTPTDFYVRLSVLA
RRY----GVPIAVDTSGEPLA-VTARAGA---ANLLKPNHHELAELLD------REL-T-TLGD----VVDATREVLSWG
NDAALVTLGSYGALLVEPD-RFWWAGG--PPIV-PRSTVGAGDSTLAGFLFD---DGAPE--ERLRRAVSWGSAAVALPG
TTIPGPADINDEGVVVVPEPDLS
>NTL06SA3692_S.averm/2-309
ILTVTPNPSLDRTYEVPSLDR-GEVIRATGERMDPGGKGVNVSRAVAAAGQRTVAVLPLGGAPGAFVAALLDAQGIDVAP
VPVA-GATRSNISVAEP-DGTLTKINAPGPELT-PAEAELLLETVREQY-RAGDTTWITCCGSLPRGLAPSWYADLVARA
HAA----GARIALDTSGPALL-EALRER----PDVVKPNAEELAEAVG------RPL-A-TVGD----AVKAAEELRGLG
AGAVLASLGADGQLLVDAS-GTWFGSA--RVDA-VRSDVGAGDSSLAGFLIA---GGSGA--DALASAVAHGAAAVQLPG
SVMPKPADLDPSAVTVTAEVPVD
>NTL01PP1530_P.profu/19-323
VVTVTLNPALDLTGSLDSLSL-GTVNVVNKGSLHPAGKGVNVAKVLAELGADVTVTGLLGADNQEPFCQLFEEIGATDKF
IRVK-GASRINVKLVES-MGKVSDINFPGVAVS-QDDINRFEQTLFELA-ETHD--VFVIAGSLPAGITPELCADWIARL
HQE----GKKVLFDSSKAALV-AGFSKN----PWLVKPNDEELAQWAG------REL-T-TEHD----FTEVAEQLAEQG
IANVVVSLGADGVMWLNNE-GWLRSQP--PKMQ-VVSTVGAGDTLVAGMCWGHINKWSKQ--ETLRFATALSALAVSQVG
VGVEDINAVNA----MKERVTIS
>NTL01LJ0147_L.johns/2-305
IYTITLNPAIDLVIITKKLEP-NIVNRTENFELQPNGKGVNVSFILKKMGIENVATGIGGGFTLDYITAGLTEKGISNNF
LKVK-EPTRINVFTRVIDQNREYKEVNPGPEVS-EKVQEQFLKYLRTTL-KESD--TLIISGSFSRGINQDYLVKIAKVM
ADK----KVKLVIDSSSKAVL-DTLPYY----PYLLKPNDQELASFFD------LNE-KLDQEK----IIKLARKLIDDG
CKNVLVSLGDSGAALIDKN-HAYFGNA--PKIS-VINTAGAGDTMLGTFIGKKELGCNTV--EALKFAIAAGSDTASRMG
--LTDFE-LEK----YLNEIHVS
>NTL02CB1743_C.botul/2-301
IYTITFNPALDYVVKVEDFKT-GNLNRTSYEKIHAGGKGINVSIVLNNLDVENIALGYIAGFTGDEIERRVRSFGCKTDF
IRLKNGMSRINVKLK---SKEESEINGTGPSIS-AENLDELFNKLD-NL-KEGD--FLILAGSIPKTLPENIYETIMERL
KDK----NIKFVVDATGELLL-KVLKYK----PFLIKPNHHELSELFH------VEI-K-NEEE----IIGYSRKLQTMG
AENVLISMAGDGAIFISSK-GEIIKSSV-PKGV-LKNSVGAGDSMVAGFISGYLKNNNLE--NAFKMGLATGSASAFSER
--LATKEKVEE----TLKQIL--
>NTL05SE2913_S.enter/2-302
IYTLTLNSAIDMNIFSDPLQP-NIVNRTHHTEFCPNGKGVNVALVLDHFQIPAHILGIFGGFTGHYIVESLRTKKMPVTP
AWVE-EPTRINIFIHD--GQQEYKLVNPGSYIP-DECKQQIITIIS-QL-PDAE--YLVISGSLPQGIESRFYAEIMHIC
QQK----NIGVILDISHPSLR-QLLEFK----PLLIKPNDEEVKAIFG------LTV-S-DDND----AKNALTTLHALG
AQNVLLTLGAKGMYFSNGI-DYWFCSA--PTVD-LVSSACAGDAALAAFLSQWLSTGEVE--YALSLASATGADVASSAG
--LGQLAAIET----LLSQIHVR
>NTL04HI0496_H.influ/4-309
VVTITLNAAYDLVGRLNRIQL-GEVNTVETLGLFPAGKGINVAKVLKDLGVNVAVGGFLGKDNSADFEQMFNQHGLKDKF
HRVN-GKTRINVKITET-EADVTDLNFLGYQIS-PQIWQQFVTDSLAYC-LDYD--IVAVCGSLPRGVSPELFADWLNQL
HQA----GVKVVLDSSNAALT-AGLKAK----PWLVKPNHRELEAWVG------HSL-N-SLEE----IIAAAQQLKAEG
IENVIISMGAKGSLWINNE-GVLKAEP--AKCENVVSTVGAGDSMVAGLIYGFEKGLSKT--ETLAFATAVSAFAVSQSN
VGVSDLSLLDP----ILEKVQIT
>NTL01LX0495_L.xyli/2-311
IVTLTANPSLDRAVALAGPLRPGEVQFAASSREDAGGKGITVARVIAAAGVSTLAVLPLAGD--DPFGAVLRSSAVPTRP
VAIH-GHARANLTITDP-AGATTKLNLPGATLR-AEEAETLGEAVVDAC-AGAS--WLVLAGSLPPGVGDDFYVTVIRAV
RERWGEAAPRVAVDTAGEALRTVVADAR----PDLIKPNDDELAELSG------AAL-D-P-GDVERSVLRVARTLVPGR
VGAALITLGSRGSILVTPS-GGYVAAA--PRIR-VQSTVGAGDSALAGYLLADVAGASAP--QRLAGAIRYGSAAAALPG
TQAPHPADLPR------DDIRVA
>NTL02SM0101_S.mutan/3-306
IYTCTMNLAIDLFIETEHLYE-SKVNRALSDDIQANGKGVNVSFIMKRLGLENTALGFSGGFTGKYVADNLEAEGIAAPF
VEVE-GLTRINVFTKVNATCQEFKLVNQGPLVN-EAAQCRLLQQIS-KF-KKGD--YLVVSGSLPRGVPSQILYDIAKLC
YEK----GVNLIFDVSDCIIM-DSLSFH----PFLLKPNEEELATWFG------KNQ-L-EEEQ----LISYAKQLIVKG
ARHVLLSLGQDGAIFIDSHFNVYQANA--PRGK-VVNTACAGDTLLGTFLAGFIRQESLE--RVLAKSVAAGSSTAFRSG
--ITDFSDVNE----LKEQIMVK
>NTL02MF0181_M.floru/2-308
IYTVTLNPALDHIIETDGFNI-GETNYYKNEYVVIGGKGINVSIILNNLEAKVLSTGILGSNNKNSFLEKFDENNLKNKF
FINK-GVTRTNLKIKNLSKFEETELNGLGSTVS-LEIINELKTFLNDNL-KSGD--ILVAAGSIPAGVKNNIYEEIGNIA
NEK----NALFILDTSKVNML-NGLKTK----PYLIKPNIEEICEILN------LPFKEYTFEE----TCEMVKKLKSLG
ARNVLLSRGSKGSYFFSEK-GEIFETGI-AKGK-LVNSVGSGDSMIAGFTYGLYKNLSIE--ECLQFGAAAGGATAFTEW
--LGLKEDILK----LKQEIKVN
>NTL02RR1970_R.rubru/14-323
VRTLTLNPAIDQTITLEALTP-GTVHRARATRSDAGGKGINVAACLADWGESVAVYGVLGRDNSGPFDALFAAKGMIDRF
VRIP-GETRTNIKLVSSGGGPTTDINLPGLEID-RPCLERVATALLADL-APGT--PVVLSGSLPRGLDDKTYVGLVGAL
RER----GAKVVLDVSGWPLT-RALEAPADHLPHCVKPNRHELESWAG------RAL-P-TLAD----VQEAAHGLRGKG
VARVVVSLGSDGALFVSDE-GALHAKL--PAMT-ALSTVGAGDAMVAGLVAALRQDLGLE--DTARLATAFAAAKLRHVG
AQLPGRDVVLA----LAGQTHIA
>NTL01NF5257_N.farci/5-308
ILTVTMNPAYDTTYRVERFER-GRAHRVRSVEQRIGGKGINVTRVLNQLGRYARATGF-----ADHAFAAAAELELPVDF
VHAL-PWVRRTVVISESDDGTATALAEPGARVSNPHACEQLAVRVAGLL-PDLG--GLVISGSLPGGIDAGLPAQIADSA
VAA----GVPTICDVEDEALR-LVAKVP----GVVLMPNAAELTFLTG------DEP-Q-TARE----VVRAARPLVDAG
VRAVVATRGARGMVAVTPE-GAWWGGL--PQPL-AGNPTGAGDSAAAAVIAALAGGGEPDWPAILTDAVATAAAAVVIPV
AGEIDRGLRTE----LAPTVRIE
>NTL01HM0304_H.maris/2-300
IVTVTYNPAVDQTIQFDEQMAPERVMRANKAQFDAGGKGINAAQFLTAMDRPCVATGLLGGFTGSFIRETLQDDGVETAF
IDVD-GTTRLNTTAIA--AVEEYKLNQAGPTVG-ESVVDALLEQVRA---QSPD--RVLIGGSLPPGLSPNAIDRIAA--
-GG----DWETIVDTGGDVLR--ELDAQ----YGLCKPNRAELGDATG------ADV-S-TVEG----CADAADAFRDRG
FDRVLASLGADGAVLVGDT-GRLYAEA--LDID-VVDTVGAGDALLSGVLSAWEAGADDE--TALRTGVAVSSQVVQRAG
TAVPDLNDIGS----LRDGVTVR
>NTL01CD1397_C.dipht/2-320
ILTFTPNPSIDKTLQLDSVLTRGAVQRLSGVQTVAGGKGINVAVALAKAQADTVALYP--AHPEDPFNKLIRESQIPAQR
VTIR-GEVRINTTVTEP-DGTTTKLNIQGPQIH-EDELQALQKNLLERT-ARCS--WAVLAGSLPPGVPTDWYVHLTKLL
NAR--HPSLRIAIDTSDVPLQ-KVGESFGNCALSLIKPNGMELGQLVGLDGYVLEKE-A-AQGNFDP-VVSAARKAILQG
VENVLVTLGAAGAVLVTKD-HAWKATP--PPIT-VLSTVGAGDASLAGFILASEDGLPPE--KCLAQAVAYGAAAASFAG
THMPYPHQIDV----NHTPVTLL
>NTL03RCF0376_R.capsu/5-311
IATVSLNSAVDQTVTVPGFTA-DAVNRVAASRIDAGGKGVNVASFLAHVGHGVAVTGLLGAENAALFARHFAATGLVDAC
QRLP-GATRTNVKIVDPLQDQVTDLNFPGIAAG-PADLDAVAATLTELLAQGLD--WVALCGSLPAGIGAEAYAELAALA
RKG----GARVALDTSGPALG-LALAAR----PDIVKPNVAELGAHLG------RTL-T-GLES----VREAARDLAASG
VGLVAVSMGAGGAVLVRGA-EAVLAIP--PATP-IASTVGAGDAMVAGLIHAATLGLDLA--ETARLATAFSLGALGEIG
PHLPPPERLAA----LARTVTVK